Cluster: ChuDM_2017_SRR8942361_bin.4_CGC21
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 1
- Substrate:
- Genome ID: ChuDM_2017_SRR8942361_bin.4
- CGC Family ID: CGCFAM_09237
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ChuDM_2017_SRR8942361_bin.4_k119_10200 | ChuDM_2017_SRR8942361_bin.4_k119_10200_33 | 40882 | 42285 | + | AA4 |
| STP | ChuDM_2017_SRR8942361_bin.4_k119_10200 | ChuDM_2017_SRR8942361_bin.4_k119_10200_34 | 42618 | 43121 | + | TetR_N |
| pfam | ChuDM_2017_SRR8942361_bin.4_k119_10200 | ChuDM_2017_SRR8942361_bin.4_k119_10200_35 | 43164 | 44222 | + | FtsX |
| TC | ChuDM_2017_SRR8942361_bin.4_k119_10200 | ChuDM_2017_SRR8942361_bin.4_k119_10200_36 | 44224 | 44898 | + | 3.A.1.122.4 |
| NULL(UNKNOWN) | ChuDM_2017_SRR8942361_bin.4_k119_10200 | ChuDM_2017_SRR8942361_bin.4_k119_10200_37 | 45041 | 46060 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | ChuDM_2017_SRR8942361_bin.4_k119_10200 | ChuDM_2017_SRR8942361_bin.4_k119_10200_38 | 46157 | 46654 | + | 4.A.1.1.11 |
| NULL(UNKNOWN) | ChuDM_2017_SRR8942361_bin.4_k119_10200 | ChuDM_2017_SRR8942361_bin.4_k119_10200_39 | 46829 | 47623 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | ChuDM_2017_SRR8942361_bin.4_k119_10200 | ChuDM_2017_SRR8942361_bin.4_k119_10200_40 | 47610 | 48308 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | ChuDM_2017_SRR8942361_bin.4_k119_10200 | ChuDM_2017_SRR8942361_bin.4_k119_10200_41 | 48340 | 49002 | + | 3.A.1.124.5 |
Gene ID: ChuDM_2017_SRR8942361_bin.4_k119_10200_33
Type: CAZyme
Location: 40882 - 42285 (+)
Type: CAZyme
Location: 40882 - 42285 (+)
Gene ID: ChuDM_2017_SRR8942361_bin.4_k119_10200_34
Type: STP
Location: 42618 - 43121 (+)
Type: STP
Location: 42618 - 43121 (+)
Gene ID: ChuDM_2017_SRR8942361_bin.4_k119_10200_35
Type: pfam
Location: 43164 - 44222 (+)
Type: pfam
Location: 43164 - 44222 (+)
Gene ID: ChuDM_2017_SRR8942361_bin.4_k119_10200_36
Type: TC
Location: 44224 - 44898 (+)
Type: TC
Location: 44224 - 44898 (+)
Gene ID: ChuDM_2017_SRR8942361_bin.4_k119_10200_37
Type:
Location: 45041 - 46060 (+)
Type:
Location: 45041 - 46060 (+)
Gene ID: ChuDM_2017_SRR8942361_bin.4_k119_10200_38
Type: TC
Location: 46157 - 46654 (+)
Type: TC
Location: 46157 - 46654 (+)
Gene ID: ChuDM_2017_SRR8942361_bin.4_k119_10200_39
Type:
Location: 46829 - 47623 (+)
Type:
Location: 46829 - 47623 (+)
Gene ID: ChuDM_2017_SRR8942361_bin.4_k119_10200_40
Type:
Location: 47610 - 48308 (+)
Type:
Location: 47610 - 48308 (+)
Gene ID: ChuDM_2017_SRR8942361_bin.4_k119_10200_41
Type: TC
Location: 48340 - 49002 (+)
Type: TC
Location: 48340 - 49002 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Lactobacillus
Species
Lactobacillus delbrueckii_B
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.