Cluster: ChuDM_2017_SRR8942361_bin.4_CGC19
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate: host glycan/beta-glucan
- Genome ID: ChuDM_2017_SRR8942361_bin.4
- CGC Family ID: CGCFAM_00020
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ChuDM_2017_SRR8942361_bin.4_k119_6686 | ChuDM_2017_SRR8942361_bin.4_k119_6686_31 | 29623 | 31044 | - | 4.A.5.1.6 |
| pfam | ChuDM_2017_SRR8942361_bin.4_k119_6686 | ChuDM_2017_SRR8942361_bin.4_k119_6686_32 | 31096 | 31410 | - | PTS_IIB |
| TC | ChuDM_2017_SRR8942361_bin.4_k119_6686 | ChuDM_2017_SRR8942361_bin.4_k119_6686_33 | 31432 | 31920 | - | 4.A.5.1.6 |
| pfam | ChuDM_2017_SRR8942361_bin.4_k119_6686 | ChuDM_2017_SRR8942361_bin.4_k119_6686_34 | 32253 | 33017 | + | DUF1129 |
| CAZyme | ChuDM_2017_SRR8942361_bin.4_k119_6686 | ChuDM_2017_SRR8942361_bin.4_k119_6686_35 | 33232 | 34677 | - | GH1 |
| TC | ChuDM_2017_SRR8942361_bin.4_k119_6686 | ChuDM_2017_SRR8942361_bin.4_k119_6686_36 | 34688 | 36397 | - | 4.A.3.1.3 |
| pfam | ChuDM_2017_SRR8942361_bin.4_k119_6686 | ChuDM_2017_SRR8942361_bin.4_k119_6686_37 | 36497 | 37429 | - | PRD | PRD | CAT_RBD |
| TC | ChuDM_2017_SRR8942361_bin.4_k119_6686 | ChuDM_2017_SRR8942361_bin.4_k119_6686_38 | 37642 | 37995 | - | 4.A.3.1.3 |
Gene ID: ChuDM_2017_SRR8942361_bin.4_k119_6686_31
Type: TC
Location: 29623 - 31044 (-)
Type: TC
Location: 29623 - 31044 (-)
Gene ID: ChuDM_2017_SRR8942361_bin.4_k119_6686_32
Type: pfam
Location: 31096 - 31410 (-)
Type: pfam
Location: 31096 - 31410 (-)
Gene ID: ChuDM_2017_SRR8942361_bin.4_k119_6686_33
Type: TC
Location: 31432 - 31920 (-)
Type: TC
Location: 31432 - 31920 (-)
Gene ID: ChuDM_2017_SRR8942361_bin.4_k119_6686_34
Type: pfam
Location: 32253 - 33017 (+)
Type: pfam
Location: 32253 - 33017 (+)
Gene ID: ChuDM_2017_SRR8942361_bin.4_k119_6686_35
Type: CAZyme
Location: 33232 - 34677 (-)
Type: CAZyme
Location: 33232 - 34677 (-)
Gene ID: ChuDM_2017_SRR8942361_bin.4_k119_6686_36
Type: TC
Location: 34688 - 36397 (-)
Type: TC
Location: 34688 - 36397 (-)
Gene ID: ChuDM_2017_SRR8942361_bin.4_k119_6686_37
Type: pfam
Location: 36497 - 37429 (-)
Type: pfam
Location: 36497 - 37429 (-)
Gene ID: ChuDM_2017_SRR8942361_bin.4_k119_6686_38
Type: TC
Location: 37642 - 37995 (-)
Type: TC
Location: 37642 - 37995 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Lactobacillus
Species
Lactobacillus delbrueckii_B
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.