Cluster: ChuDM_2017_SRR8942361_bin.4_CGC16
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 4
- Substrate:
- Genome ID: ChuDM_2017_SRR8942361_bin.4
- CGC Family ID: CGCFAM_00348
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ChuDM_2017_SRR8942361_bin.4_k119_5790 | ChuDM_2017_SRR8942361_bin.4_k119_5790_52 | 50506 | 51939 | - | 2.A.66.2.16 |
| CAZyme | ChuDM_2017_SRR8942361_bin.4_k119_5790 | ChuDM_2017_SRR8942361_bin.4_k119_5790_53 | 51997 | 52998 | - | GT2 |
| CAZyme | ChuDM_2017_SRR8942361_bin.4_k119_5790 | ChuDM_2017_SRR8942361_bin.4_k119_5790_54 | 52995 | 54122 | - | GT4 |
| pfam | ChuDM_2017_SRR8942361_bin.4_k119_5790 | ChuDM_2017_SRR8942361_bin.4_k119_5790_55 | 54115 | 55047 | - | LicD |
| STP | ChuDM_2017_SRR8942361_bin.4_k119_5790 | ChuDM_2017_SRR8942361_bin.4_k119_5790_56 | 55059 | 56168 | - | Pyr_redox |
| CAZyme | ChuDM_2017_SRR8942361_bin.4_k119_5790 | ChuDM_2017_SRR8942361_bin.4_k119_5790_57 | 56189 | 56923 | - | GT111 |
| TC | ChuDM_2017_SRR8942361_bin.4_k119_5790 | ChuDM_2017_SRR8942361_bin.4_k119_5790_58 | 56981 | 57634 | - | 9.B.18.1.2 |
| pfam | ChuDM_2017_SRR8942361_bin.4_k119_5790 | ChuDM_2017_SRR8942361_bin.4_k119_5790_59 | 57845 | 58825 | - | LytR_cpsA_psr |
| pfam | ChuDM_2017_SRR8942361_bin.4_k119_5790 | ChuDM_2017_SRR8942361_bin.4_k119_5790_60 | 59069 | 60319 | - | LytR_cpsA_psr |
| CAZyme | ChuDM_2017_SRR8942361_bin.4_k119_5790 | ChuDM_2017_SRR8942361_bin.4_k119_5790_61 | 60482 | 63712 | - | GH68_1 |
Gene ID: ChuDM_2017_SRR8942361_bin.4_k119_5790_52
Type: TC
Location: 50506 - 51939 (-)
Type: TC
Location: 50506 - 51939 (-)
Gene ID: ChuDM_2017_SRR8942361_bin.4_k119_5790_53
Type: CAZyme
Location: 51997 - 52998 (-)
Type: CAZyme
Location: 51997 - 52998 (-)
Gene ID: ChuDM_2017_SRR8942361_bin.4_k119_5790_54
Type: CAZyme
Location: 52995 - 54122 (-)
Type: CAZyme
Location: 52995 - 54122 (-)
Gene ID: ChuDM_2017_SRR8942361_bin.4_k119_5790_55
Type: pfam
Location: 54115 - 55047 (-)
Type: pfam
Location: 54115 - 55047 (-)
Gene ID: ChuDM_2017_SRR8942361_bin.4_k119_5790_56
Type: STP
Location: 55059 - 56168 (-)
Type: STP
Location: 55059 - 56168 (-)
Gene ID: ChuDM_2017_SRR8942361_bin.4_k119_5790_57
Type: CAZyme
Location: 56189 - 56923 (-)
Type: CAZyme
Location: 56189 - 56923 (-)
Gene ID: ChuDM_2017_SRR8942361_bin.4_k119_5790_58
Type: TC
Location: 56981 - 57634 (-)
Type: TC
Location: 56981 - 57634 (-)
Gene ID: ChuDM_2017_SRR8942361_bin.4_k119_5790_59
Type: pfam
Location: 57845 - 58825 (-)
Type: pfam
Location: 57845 - 58825 (-)
Gene ID: ChuDM_2017_SRR8942361_bin.4_k119_5790_60
Type: pfam
Location: 59069 - 60319 (-)
Type: pfam
Location: 59069 - 60319 (-)
Gene ID: ChuDM_2017_SRR8942361_bin.4_k119_5790_61
Type: CAZyme
Location: 60482 - 63712 (-)
Type: CAZyme
Location: 60482 - 63712 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Lactobacillus
Species
Lactobacillus delbrueckii_B
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.