Cluster: ChuDM_2017_SRR8942361_bin.4_CGC13
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: ChuDM_2017_SRR8942361_bin.4
- CGC Family ID: CGCFAM_01385
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ChuDM_2017_SRR8942361_bin.4_k119_5544 | ChuDM_2017_SRR8942361_bin.4_k119_5544_30 | 29017 | 30300 | - | 2.A.40.1.2 |
| pfam | ChuDM_2017_SRR8942361_bin.4_k119_5544 | ChuDM_2017_SRR8942361_bin.4_k119_5544_31 | 30532 | 31605 | - | PTS_EIIC_2 |
| TC | ChuDM_2017_SRR8942361_bin.4_k119_5544 | ChuDM_2017_SRR8942361_bin.4_k119_5544_32 | 32102 | 33421 | - | 4.A.3.2.4 |
| TC | ChuDM_2017_SRR8942361_bin.4_k119_5544 | ChuDM_2017_SRR8942361_bin.4_k119_5544_33 | 33414 | 34670 | - | 3.A.18.1.1 |
| CAZyme | ChuDM_2017_SRR8942361_bin.4_k119_5544 | ChuDM_2017_SRR8942361_bin.4_k119_5544_34 | 34667 | 35353 | - | GH25 |
| TC | ChuDM_2017_SRR8942361_bin.4_k119_5544 | ChuDM_2017_SRR8942361_bin.4_k119_5544_35 | 35460 | 36752 | + | 2.A.3.8.12 |
| STP | ChuDM_2017_SRR8942361_bin.4_k119_5544 | ChuDM_2017_SRR8942361_bin.4_k119_5544_36 | 36839 | 37411 | - | Pribosyltran |
| TC | ChuDM_2017_SRR8942361_bin.4_k119_5544 | ChuDM_2017_SRR8942361_bin.4_k119_5544_37 | 37520 | 38866 | - | 9.A.40.2.1 |
Gene ID: ChuDM_2017_SRR8942361_bin.4_k119_5544_30
Type: TC
Location: 29017 - 30300 (-)
Type: TC
Location: 29017 - 30300 (-)
Gene ID: ChuDM_2017_SRR8942361_bin.4_k119_5544_31
Type: pfam
Location: 30532 - 31605 (-)
Type: pfam
Location: 30532 - 31605 (-)
Gene ID: ChuDM_2017_SRR8942361_bin.4_k119_5544_32
Type: TC
Location: 32102 - 33421 (-)
Type: TC
Location: 32102 - 33421 (-)
Gene ID: ChuDM_2017_SRR8942361_bin.4_k119_5544_33
Type: TC
Location: 33414 - 34670 (-)
Type: TC
Location: 33414 - 34670 (-)
Gene ID: ChuDM_2017_SRR8942361_bin.4_k119_5544_34
Type: CAZyme
Location: 34667 - 35353 (-)
Type: CAZyme
Location: 34667 - 35353 (-)
Gene ID: ChuDM_2017_SRR8942361_bin.4_k119_5544_35
Type: TC
Location: 35460 - 36752 (+)
Type: TC
Location: 35460 - 36752 (+)
Gene ID: ChuDM_2017_SRR8942361_bin.4_k119_5544_36
Type: STP
Location: 36839 - 37411 (-)
Type: STP
Location: 36839 - 37411 (-)
Gene ID: ChuDM_2017_SRR8942361_bin.4_k119_5544_37
Type: TC
Location: 37520 - 38866 (-)
Type: TC
Location: 37520 - 38866 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Lactobacillus
Species
Lactobacillus delbrueckii_B
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.