Cluster: ChuDM_2017_SRR8942361_bin.4_CGC12
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: ChuDM_2017_SRR8942361_bin.4
- CGC Family ID: CGCFAM_08130
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ChuDM_2017_SRR8942361_bin.4_k119_5541 | ChuDM_2017_SRR8942361_bin.4_k119_5541_12 | 12889 | 14388 | + | 3.A.1.121.2 |
| NULL(UNKNOWN) | ChuDM_2017_SRR8942361_bin.4_k119_5541 | ChuDM_2017_SRR8942361_bin.4_k119_5541_13 | 14485 | 14598 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| STP | ChuDM_2017_SRR8942361_bin.4_k119_5541 | ChuDM_2017_SRR8942361_bin.4_k119_5541_14 | 14709 | 15365 | - | NUDIX |
| CAZyme | ChuDM_2017_SRR8942361_bin.4_k119_5541 | ChuDM_2017_SRR8942361_bin.4_k119_5541_15 | 15420 | 16448 | + | GH18 |
| STP | ChuDM_2017_SRR8942361_bin.4_k119_5541 | ChuDM_2017_SRR8942361_bin.4_k119_5541_16 | 16525 | 17076 | - | NUDIX |
| TC | ChuDM_2017_SRR8942361_bin.4_k119_5541 | ChuDM_2017_SRR8942361_bin.4_k119_5541_17 | 17437 | 18981 | - | 2.A.118.1.7 |
| TC | ChuDM_2017_SRR8942361_bin.4_k119_5541 | ChuDM_2017_SRR8942361_bin.4_k119_5541_18 | 19201 | 19995 | - | 3.A.1.23.6 |
| TC | ChuDM_2017_SRR8942361_bin.4_k119_5541 | ChuDM_2017_SRR8942361_bin.4_k119_5541_19 | 19985 | 20803 | - | 3.A.1.25.4 |
Gene ID: ChuDM_2017_SRR8942361_bin.4_k119_5541_12
Type: TC
Location: 12889 - 14388 (+)
Type: TC
Location: 12889 - 14388 (+)
Gene ID: ChuDM_2017_SRR8942361_bin.4_k119_5541_13
Type:
Location: 14485 - 14598 (+)
Type:
Location: 14485 - 14598 (+)
Gene ID: ChuDM_2017_SRR8942361_bin.4_k119_5541_14
Type: STP
Location: 14709 - 15365 (-)
Type: STP
Location: 14709 - 15365 (-)
Gene ID: ChuDM_2017_SRR8942361_bin.4_k119_5541_15
Type: CAZyme
Location: 15420 - 16448 (+)
Type: CAZyme
Location: 15420 - 16448 (+)
Gene ID: ChuDM_2017_SRR8942361_bin.4_k119_5541_16
Type: STP
Location: 16525 - 17076 (-)
Type: STP
Location: 16525 - 17076 (-)
Gene ID: ChuDM_2017_SRR8942361_bin.4_k119_5541_17
Type: TC
Location: 17437 - 18981 (-)
Type: TC
Location: 17437 - 18981 (-)
Gene ID: ChuDM_2017_SRR8942361_bin.4_k119_5541_18
Type: TC
Location: 19201 - 19995 (-)
Type: TC
Location: 19201 - 19995 (-)
Gene ID: ChuDM_2017_SRR8942361_bin.4_k119_5541_19
Type: TC
Location: 19985 - 20803 (-)
Type: TC
Location: 19985 - 20803 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Lactobacillus
Species
Lactobacillus delbrueckii_B
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.