Cluster: CGMR100343_CGC4
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate: pectin/alpha-glucan
- Genome ID: CGMR100343
- CGC Family ID: CGCFAM_00025
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_48355 | k141_48355_12 | 11984 | 15055 | + | 1.B.14.6.1 |
| TC | k141_48355 | k141_48355_13 | 15067 | 16695 | + | 8.A.46.1.1 |
| pfam | k141_48355 | k141_48355_14 | 16713 | 17774 | + | SusE | SusF_SusE |
| CAZyme | k141_48355 | k141_48355_15 | 17786 | 19993 | + | GH97 |
| CAZyme | k141_48355 | k141_48355_16 | 20090 | 21943 | + | GH13_46 |
| pfam | k141_48355 | k141_48355_17 | 22044 | 23474 | - | Lyase_1 | FumaraseC_C |
| TC | k141_48355 | k141_48355_18 | 23794 | 25113 | + | 2.A.13.1.3 |
Gene ID: k141_48355_12
Type: TC
Location: 11984 - 15055 (+)
Type: TC
Location: 11984 - 15055 (+)
Gene ID: k141_48355_13
Type: TC
Location: 15067 - 16695 (+)
Type: TC
Location: 15067 - 16695 (+)
Gene ID: k141_48355_14
Type: pfam
Location: 16713 - 17774 (+)
Type: pfam
Location: 16713 - 17774 (+)
Gene ID: k141_48355_15
Type: CAZyme
Location: 17786 - 19993 (+)
Type: CAZyme
Location: 17786 - 19993 (+)
Gene ID: k141_48355_16
Type: CAZyme
Location: 20090 - 21943 (+)
Type: CAZyme
Location: 20090 - 21943 (+)
Gene ID: k141_48355_17
Type: pfam
Location: 22044 - 23474 (-)
Type: pfam
Location: 22044 - 23474 (-)
Gene ID: k141_48355_18
Type: TC
Location: 23794 - 25113 (+)
Type: TC
Location: 23794 - 25113 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides_E
Species
Bacteroides_E sp030152865
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.