Cluster: CGMR099484_CGC74
🧬 Cluster Details
- Gene Count: 18
- CAZyme Count: 10
- Substrate:
- Genome ID: CGMR099484
- CGC Family ID: CGCFAM_09205
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_56815 | k141_56815_61 | 100099 | 101325 | + | GH88 |
| STP | k141_56815 | k141_56815_62 | 101350 | 101895 | + | Sigma70_r2 | Sigma70_r4_2 |
| TC | k141_56815 | k141_56815_63 | 102036 | 105113 | + | 1.B.14.6.1 |
| TC | k141_56815 | k141_56815_64 | 105124 | 106950 | + | 8.A.46.1.6 |
| CAZyme | k141_56815 | k141_56815_65 | 107103 | 109037 | + | GH97 |
| CAZyme | k141_56815 | k141_56815_66 | 109034 | 112459 | + | GH92 |
| CAZyme | k141_56815 | k141_56815_67 | 112613 | 114979 | - | GH3 |
| NULL(UNKNOWN) | k141_56815 | k141_56815_68 | 115101 | 116714 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | k141_56815 | k141_56815_69 | 116804 | 119542 | + | PL40 |
| TF | k141_56815 | k141_56815_70 | 119700 | 122513 | + | HTH_AraC |
| STP | k141_56815 | k141_56815_71 | 122715 | 123230 | + | Sigma70_r2 | Sigma70_r4_2 |
| TC | k141_56815 | k141_56815_72 | 123274 | 126612 | + | 1.B.14.6.1 |
| TC | k141_56815 | k141_56815_73 | 126638 | 128569 | + | 8.A.46.1.5 |
| CAZyme | k141_56815 | k141_56815_74 | 128831 | 130783 | + | GH97 |
| CAZyme | k141_56815 | k141_56815_75 | 130867 | 133077 | + | GH36 |
| CAZyme | k141_56815 | k141_56815_76 | 133312 | 135795 | + | GH51_2 |
| CAZyme | k141_56815 | k141_56815_77 | 135823 | 137250 | + | GH30_2 |
| CAZyme | k141_56815 | k141_56815_78 | 137247 | 138680 | + | GH28 |
Gene ID: k141_56815_61
Type: CAZyme
Location: 100099 - 101325 (+)
Type: CAZyme
Location: 100099 - 101325 (+)
Gene ID: k141_56815_62
Type: STP
Location: 101350 - 101895 (+)
Type: STP
Location: 101350 - 101895 (+)
Gene ID: k141_56815_63
Type: TC
Location: 102036 - 105113 (+)
Type: TC
Location: 102036 - 105113 (+)
Gene ID: k141_56815_64
Type: TC
Location: 105124 - 106950 (+)
Type: TC
Location: 105124 - 106950 (+)
Gene ID: k141_56815_65
Type: CAZyme
Location: 107103 - 109037 (+)
Type: CAZyme
Location: 107103 - 109037 (+)
Gene ID: k141_56815_66
Type: CAZyme
Location: 109034 - 112459 (+)
Type: CAZyme
Location: 109034 - 112459 (+)
Gene ID: k141_56815_67
Type: CAZyme
Location: 112613 - 114979 (-)
Type: CAZyme
Location: 112613 - 114979 (-)
Gene ID: k141_56815_68
Type:
Location: 115101 - 116714 (+)
Type:
Location: 115101 - 116714 (+)
Gene ID: k141_56815_69
Type: CAZyme
Location: 116804 - 119542 (+)
Type: CAZyme
Location: 116804 - 119542 (+)
Gene ID: k141_56815_70
Type: TF
Location: 119700 - 122513 (+)
Type: TF
Location: 119700 - 122513 (+)
Gene ID: k141_56815_71
Type: STP
Location: 122715 - 123230 (+)
Type: STP
Location: 122715 - 123230 (+)
Gene ID: k141_56815_72
Type: TC
Location: 123274 - 126612 (+)
Type: TC
Location: 123274 - 126612 (+)
Gene ID: k141_56815_73
Type: TC
Location: 126638 - 128569 (+)
Type: TC
Location: 126638 - 128569 (+)
Gene ID: k141_56815_74
Type: CAZyme
Location: 128831 - 130783 (+)
Type: CAZyme
Location: 128831 - 130783 (+)
Gene ID: k141_56815_75
Type: CAZyme
Location: 130867 - 133077 (+)
Type: CAZyme
Location: 130867 - 133077 (+)
Gene ID: k141_56815_76
Type: CAZyme
Location: 133312 - 135795 (+)
Type: CAZyme
Location: 133312 - 135795 (+)
Gene ID: k141_56815_77
Type: CAZyme
Location: 135823 - 137250 (+)
Type: CAZyme
Location: 135823 - 137250 (+)
Gene ID: k141_56815_78
Type: CAZyme
Location: 137247 - 138680 (+)
Type: CAZyme
Location: 137247 - 138680 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola sartorii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_56815_63 | vegan > omnivore | 1.14318 | 0.04214 |
| k141_56815_64 | vegan > omnivore | 1.27536 | 0.04214 |
| k141_56815_65 | vegetarian > omnivore | 1.06273 | 0.01057 |
| k141_56815_66 | vegetarian > omnivore | 1.13381 | 0.01096 |
| k141_56815_74 | vegan > omnivore | 2.13446 | 0.04214 |
| k141_56815_75 | vegan > omnivore | 1.12027 | 0.04214 |
| k141_56815_76 | vegan > omnivore | 2.03750 | 0.04214 |
| k141_56815_77 | vegan > omnivore | 1.81405 | 0.04214 |