Cluster: CGMR099484_CGC72
🧬 Cluster Details
- Gene Count: 19
- CAZyme Count: 12
- Substrate: pectin
- Genome ID: CGMR099484
- CGC Family ID: CGCFAM_01809
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_56815 | k141_56815_4 | 884 | 3646 | - | GH106 |
| CAZyme | k141_56815 | k141_56815_5 | 3659 | 5086 | - | GH28 |
| NULL(UNKNOWN) | k141_56815 | k141_56815_6 | 5102 | 5905 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | k141_56815 | k141_56815_7 | 5902 | 6600 | - | DUF4450 |
| CAZyme | k141_56815 | k141_56815_8 | 6578 | 8062 | - | GH28 |
| CAZyme | k141_56815 | k141_56815_9 | 8080 | 9354 | - | CE12 |
| CAZyme | k141_56815 | k141_56815_10 | 9373 | 12240 | - | GH2 |
| CAZyme | k141_56815 | k141_56815_11 | 12451 | 13398 | + | GH43_18 |
| CAZyme | k141_56815 | k141_56815_12 | 13413 | 15491 | + | GH42 |
| CAZyme | k141_56815 | k141_56815_13 | 15610 | 16740 | - | GH105 |
| CAZyme | k141_56815 | k141_56815_14 | 16861 | 20172 | - | GH106 | GH28 |
| CAZyme | k141_56815 | k141_56815_15 | 20286 | 22139 | - | PL11 |
| CAZyme | k141_56815 | k141_56815_16 | 22155 | 23438 | - | CE15 |
| CAZyme | k141_56815 | k141_56815_17 | 23481 | 25262 | - | GH78 |
| NULL(UNKNOWN) | k141_56815 | k141_56815_18 | 25479 | 25793 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | k141_56815 | k141_56815_19 | 25883 | 28021 | - | SusD_RagB | SusD-like_3 |
| TC | k141_56815 | k141_56815_20 | 28053 | 31205 | - | 1.B.14.6.1 |
| pfam | k141_56815 | k141_56815_21 | 31494 | 32675 | + | Phage_int_SAM_5 | Arm-DNA-bind_5 |
| TC | k141_56815 | k141_56815_22 | 32899 | 36267 | + | 1.B.14.6.1 |
Gene ID: k141_56815_4
Type: CAZyme
Location: 884 - 3646 (-)
Type: CAZyme
Location: 884 - 3646 (-)
Gene ID: k141_56815_5
Type: CAZyme
Location: 3659 - 5086 (-)
Type: CAZyme
Location: 3659 - 5086 (-)
Gene ID: k141_56815_6
Type:
Location: 5102 - 5905 (-)
Type:
Location: 5102 - 5905 (-)
Gene ID: k141_56815_7
Type: pfam
Location: 5902 - 6600 (-)
Type: pfam
Location: 5902 - 6600 (-)
Gene ID: k141_56815_8
Type: CAZyme
Location: 6578 - 8062 (-)
Type: CAZyme
Location: 6578 - 8062 (-)
Gene ID: k141_56815_9
Type: CAZyme
Location: 8080 - 9354 (-)
Type: CAZyme
Location: 8080 - 9354 (-)
Gene ID: k141_56815_10
Type: CAZyme
Location: 9373 - 12240 (-)
Type: CAZyme
Location: 9373 - 12240 (-)
Gene ID: k141_56815_11
Type: CAZyme
Location: 12451 - 13398 (+)
Type: CAZyme
Location: 12451 - 13398 (+)
Gene ID: k141_56815_12
Type: CAZyme
Location: 13413 - 15491 (+)
Type: CAZyme
Location: 13413 - 15491 (+)
Gene ID: k141_56815_13
Type: CAZyme
Location: 15610 - 16740 (-)
Type: CAZyme
Location: 15610 - 16740 (-)
Gene ID: k141_56815_14
Type: CAZyme
Location: 16861 - 20172 (-)
Type: CAZyme
Location: 16861 - 20172 (-)
Gene ID: k141_56815_15
Type: CAZyme
Location: 20286 - 22139 (-)
Type: CAZyme
Location: 20286 - 22139 (-)
Gene ID: k141_56815_16
Type: CAZyme
Location: 22155 - 23438 (-)
Type: CAZyme
Location: 22155 - 23438 (-)
Gene ID: k141_56815_17
Type: CAZyme
Location: 23481 - 25262 (-)
Type: CAZyme
Location: 23481 - 25262 (-)
Gene ID: k141_56815_18
Type:
Location: 25479 - 25793 (-)
Type:
Location: 25479 - 25793 (-)
Gene ID: k141_56815_19
Type: pfam
Location: 25883 - 28021 (-)
Type: pfam
Location: 25883 - 28021 (-)
Gene ID: k141_56815_20
Type: TC
Location: 28053 - 31205 (-)
Type: TC
Location: 28053 - 31205 (-)
Gene ID: k141_56815_21
Type: pfam
Location: 31494 - 32675 (+)
Type: pfam
Location: 31494 - 32675 (+)
Gene ID: k141_56815_22
Type: TC
Location: 32899 - 36267 (+)
Type: TC
Location: 32899 - 36267 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola sartorii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.