Cluster: CGMR099484_CGC57
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 9
- Substrate:
- Genome ID: CGMR099484
- CGC Family ID: CGCFAM_07916
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_56614 | k141_56614_39 | 48384 | 49748 | + | PL42 |
| CAZyme | k141_56614 | k141_56614_40 | 49780 | 52095 | + | GH105 | GH154 |
| pfam | k141_56614 | k141_56614_41 | 52237 | 53277 | + | DUF3810 |
| TF | k141_56614 | k141_56614_42 | 53338 | 57360 | - | HTH_AraC |
| TC | k141_56614 | k141_56614_43 | 57679 | 60780 | + | 1.B.14.6.1 |
| TC | k141_56614 | k141_56614_44 | 60794 | 62485 | + | 8.A.46.1.6 |
| CAZyme | k141_56614 | k141_56614_45 | 62729 | 63202 | + | GH43_24 |
| CAZyme | k141_56614 | k141_56614_46 | 63236 | 63868 | + | GH43_24 |
| pfam | k141_56614 | k141_56614_47 | 64289 | 66793 | - | HRDC | PIF1 | AAA_19 | AAA_22 | AAA_30 | HTH_40 |
| CAZyme | k141_56614 | k141_56614_48 | 67157 | 69103 | + | GH43_19 | GH43_34 |
| CAZyme | k141_56614 | k141_56614_49 | 69128 | 71635 | + | GH51_2 |
| CAZyme | k141_56614 | k141_56614_50 | 71636 | 73990 | + | GH35 |
| TF | k141_56614 | k141_56614_51 | 74188 | 77028 | + | HTH_AraC | HTH_AraC |
| TC | k141_56614 | k141_56614_52 | 77240 | 80188 | + | 1.B.14.6.1 |
| TC | k141_56614 | k141_56614_53 | 80210 | 81844 | + | 8.A.46.1.1 |
| CAZyme | k141_56614 | k141_56614_54 | 81914 | 84373 | + | GH31_4 |
| CAZyme | k141_56614 | k141_56614_55 | 84427 | 86778 | + | GH146 |
Gene ID: k141_56614_39
Type: CAZyme
Location: 48384 - 49748 (+)
Type: CAZyme
Location: 48384 - 49748 (+)
Gene ID: k141_56614_40
Type: CAZyme
Location: 49780 - 52095 (+)
Type: CAZyme
Location: 49780 - 52095 (+)
Gene ID: k141_56614_41
Type: pfam
Location: 52237 - 53277 (+)
Type: pfam
Location: 52237 - 53277 (+)
Gene ID: k141_56614_42
Type: TF
Location: 53338 - 57360 (-)
Type: TF
Location: 53338 - 57360 (-)
Gene ID: k141_56614_43
Type: TC
Location: 57679 - 60780 (+)
Type: TC
Location: 57679 - 60780 (+)
Gene ID: k141_56614_44
Type: TC
Location: 60794 - 62485 (+)
Type: TC
Location: 60794 - 62485 (+)
Gene ID: k141_56614_45
Type: CAZyme
Location: 62729 - 63202 (+)
Type: CAZyme
Location: 62729 - 63202 (+)
Gene ID: k141_56614_46
Type: CAZyme
Location: 63236 - 63868 (+)
Type: CAZyme
Location: 63236 - 63868 (+)
Gene ID: k141_56614_47
Type: pfam
Location: 64289 - 66793 (-)
Type: pfam
Location: 64289 - 66793 (-)
Gene ID: k141_56614_48
Type: CAZyme
Location: 67157 - 69103 (+)
Type: CAZyme
Location: 67157 - 69103 (+)
Gene ID: k141_56614_49
Type: CAZyme
Location: 69128 - 71635 (+)
Type: CAZyme
Location: 69128 - 71635 (+)
Gene ID: k141_56614_50
Type: CAZyme
Location: 71636 - 73990 (+)
Type: CAZyme
Location: 71636 - 73990 (+)
Gene ID: k141_56614_51
Type: TF
Location: 74188 - 77028 (+)
Type: TF
Location: 74188 - 77028 (+)
Gene ID: k141_56614_52
Type: TC
Location: 77240 - 80188 (+)
Type: TC
Location: 77240 - 80188 (+)
Gene ID: k141_56614_53
Type: TC
Location: 80210 - 81844 (+)
Type: TC
Location: 80210 - 81844 (+)
Gene ID: k141_56614_54
Type: CAZyme
Location: 81914 - 84373 (+)
Type: CAZyme
Location: 81914 - 84373 (+)
Gene ID: k141_56614_55
Type: CAZyme
Location: 84427 - 86778 (+)
Type: CAZyme
Location: 84427 - 86778 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola sartorii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.