Cluster: CGMR099484_CGC55
🧬 Cluster Details
- Gene Count: 22
- CAZyme Count: 10
- Substrate:
- Genome ID: CGMR099484
- CGC Family ID: CGCFAM_03628
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_97349 | k141_97349_57 | 85516 | 88812 | - | 1.B.14.6.1 |
| STP | k141_97349 | k141_97349_58 | 88968 | 89966 | - | FecR |
| TF | k141_97349 | k141_97349_59 | 90027 | 90617 | - | GerE |
| CAZyme | k141_97349 | k141_97349_60 | 91459 | 93615 | - | GH36 |
| TF | k141_97349 | k141_97349_61 | 93803 | 94699 | + | HTH_AraC | HTH_AraC |
| CAZyme | k141_97349 | k141_97349_62 | 94712 | 96775 | - | CE20 | CE20 |
| CAZyme | k141_97349 | k141_97349_63 | 96782 | 99055 | - | GH3 |
| CAZyme | k141_97349 | k141_97349_64 | 99067 | 102009 | - | CBM32 | GH2 |
| sulfatase | k141_97349 | k141_97349_65 | 102039 | 103061 | - | S1_22 |
| pfam | k141_97349 | k141_97349_66 | 103151 | 104770 | - | SusD_RagB | SusD-like_3 |
| TC | k141_97349 | k141_97349_67 | 104807 | 107860 | - | 1.B.14.6.1 |
| CAZyme | k141_97349 | k141_97349_68 | 107900 | 109927 | - | GH36 |
| TF | k141_97349 | k141_97349_69 | 110134 | 114168 | - | HTH_AraC |
| CAZyme | k141_97349 | k141_97349_70 | 114249 | 116237 | - | GH97 |
| pfam | k141_97349 | k141_97349_71 | 116234 | 119575 | - | TPR_8 | DUF5107 |
| TC | k141_97349 | k141_97349_72 | 119588 | 120982 | - | 2.A.1.1.55 |
| CAZyme | k141_97349 | k141_97349_73 | 121192 | 123954 | - | GH92 |
| CAZyme | k141_97349 | k141_97349_74 | 124025 | 126427 | - | GH95 |
| CAZyme | k141_97349 | k141_97349_75 | 126547 | 128829 | - | GH92 |
| CAZyme | k141_97349 | k141_97349_76 | 128864 | 131062 | - | GH92 |
| pfam | k141_97349 | k141_97349_77 | 131329 | 132507 | - | DUF418 |
| TC | k141_97349 | k141_97349_78 | 132515 | 133564 | - | 9.B.97.3.1 |
Gene ID: k141_97349_57
Type: TC
Location: 85516 - 88812 (-)
Type: TC
Location: 85516 - 88812 (-)
Gene ID: k141_97349_58
Type: STP
Location: 88968 - 89966 (-)
Type: STP
Location: 88968 - 89966 (-)
Gene ID: k141_97349_59
Type: TF
Location: 90027 - 90617 (-)
Type: TF
Location: 90027 - 90617 (-)
Gene ID: k141_97349_60
Type: CAZyme
Location: 91459 - 93615 (-)
Type: CAZyme
Location: 91459 - 93615 (-)
Gene ID: k141_97349_61
Type: TF
Location: 93803 - 94699 (+)
Type: TF
Location: 93803 - 94699 (+)
Gene ID: k141_97349_62
Type: CAZyme
Location: 94712 - 96775 (-)
Type: CAZyme
Location: 94712 - 96775 (-)
Gene ID: k141_97349_63
Type: CAZyme
Location: 96782 - 99055 (-)
Type: CAZyme
Location: 96782 - 99055 (-)
Gene ID: k141_97349_64
Type: CAZyme
Location: 99067 - 102009 (-)
Type: CAZyme
Location: 99067 - 102009 (-)
Gene ID: k141_97349_65
Type: sulfatase
Location: 102039 - 103061 (-)
Type: sulfatase
Location: 102039 - 103061 (-)
Gene ID: k141_97349_66
Type: pfam
Location: 103151 - 104770 (-)
Type: pfam
Location: 103151 - 104770 (-)
Gene ID: k141_97349_67
Type: TC
Location: 104807 - 107860 (-)
Type: TC
Location: 104807 - 107860 (-)
Gene ID: k141_97349_68
Type: CAZyme
Location: 107900 - 109927 (-)
Type: CAZyme
Location: 107900 - 109927 (-)
Gene ID: k141_97349_69
Type: TF
Location: 110134 - 114168 (-)
Type: TF
Location: 110134 - 114168 (-)
Gene ID: k141_97349_70
Type: CAZyme
Location: 114249 - 116237 (-)
Type: CAZyme
Location: 114249 - 116237 (-)
Gene ID: k141_97349_71
Type: pfam
Location: 116234 - 119575 (-)
Type: pfam
Location: 116234 - 119575 (-)
Gene ID: k141_97349_72
Type: TC
Location: 119588 - 120982 (-)
Type: TC
Location: 119588 - 120982 (-)
Gene ID: k141_97349_73
Type: CAZyme
Location: 121192 - 123954 (-)
Type: CAZyme
Location: 121192 - 123954 (-)
Gene ID: k141_97349_74
Type: CAZyme
Location: 124025 - 126427 (-)
Type: CAZyme
Location: 124025 - 126427 (-)
Gene ID: k141_97349_75
Type: CAZyme
Location: 126547 - 128829 (-)
Type: CAZyme
Location: 126547 - 128829 (-)
Gene ID: k141_97349_76
Type: CAZyme
Location: 128864 - 131062 (-)
Type: CAZyme
Location: 128864 - 131062 (-)
Gene ID: k141_97349_77
Type: pfam
Location: 131329 - 132507 (-)
Type: pfam
Location: 131329 - 132507 (-)
Gene ID: k141_97349_78
Type: TC
Location: 132515 - 133564 (-)
Type: TC
Location: 132515 - 133564 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola sartorii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.