Cluster: CGMR099484_CGC40
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 4
- Substrate:
- Genome ID: CGMR099484
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_14388 | k141_14388_30 | 33855 | 34847 | + | 8.A.5.1.3 |
| TC | k141_14388 | k141_14388_31 | 35612 | 38773 | + | 1.B.14.6.1 |
| pfam | k141_14388 | k141_14388_32 | 38820 | 40523 | + | SusD_RagB | SusD-like_3 |
| TF | k141_14388 | k141_14388_33 | 41113 | 45435 | + | HTH_AraC | HTH_AraC |
| CAZyme | k141_14388 | k141_14388_34 | 45515 | 46906 | + | GH28 |
| peptidase | k141_14388 | k141_14388_35 | 46947 | 47840 | + | S09.UPW |
| CAZyme | k141_14388 | k141_14388_36 | 47953 | 50610 | + | GH31_4 |
| TC | k141_14388 | k141_14388_37 | 50954 | 53941 | + | 1.B.14.6.1 |
| TC | k141_14388 | k141_14388_38 | 53956 | 55629 | + | 8.A.46.1.6 |
| TF | k141_14388 | k141_14388_39 | 55956 | 58835 | + | HTH_AraC |
| TC | k141_14388 | k141_14388_40 | 58988 | 62260 | + | 1.B.14.6.1 |
| TC | k141_14388 | k141_14388_41 | 62281 | 64056 | + | 8.A.46.1.6 |
| CAZyme | k141_14388 | k141_14388_42 | 64150 | 66711 | + | GH115 |
| CAZyme | k141_14388 | k141_14388_43 | 66727 | 69576 | + | GH2 |
| TC | k141_14388 | k141_14388_44 | 69735 | 72122 | + | 1.B.14.3.1 |
Gene ID: k141_14388_30
Type: TC
Location: 33855 - 34847 (+)
Type: TC
Location: 33855 - 34847 (+)
Gene ID: k141_14388_31
Type: TC
Location: 35612 - 38773 (+)
Type: TC
Location: 35612 - 38773 (+)
Gene ID: k141_14388_32
Type: pfam
Location: 38820 - 40523 (+)
Type: pfam
Location: 38820 - 40523 (+)
Gene ID: k141_14388_33
Type: TF
Location: 41113 - 45435 (+)
Type: TF
Location: 41113 - 45435 (+)
Gene ID: k141_14388_34
Type: CAZyme
Location: 45515 - 46906 (+)
Type: CAZyme
Location: 45515 - 46906 (+)
Gene ID: k141_14388_35
Type: peptidase
Location: 46947 - 47840 (+)
Type: peptidase
Location: 46947 - 47840 (+)
Gene ID: k141_14388_36
Type: CAZyme
Location: 47953 - 50610 (+)
Type: CAZyme
Location: 47953 - 50610 (+)
Gene ID: k141_14388_37
Type: TC
Location: 50954 - 53941 (+)
Type: TC
Location: 50954 - 53941 (+)
Gene ID: k141_14388_38
Type: TC
Location: 53956 - 55629 (+)
Type: TC
Location: 53956 - 55629 (+)
Gene ID: k141_14388_39
Type: TF
Location: 55956 - 58835 (+)
Type: TF
Location: 55956 - 58835 (+)
Gene ID: k141_14388_40
Type: TC
Location: 58988 - 62260 (+)
Type: TC
Location: 58988 - 62260 (+)
Gene ID: k141_14388_41
Type: TC
Location: 62281 - 64056 (+)
Type: TC
Location: 62281 - 64056 (+)
Gene ID: k141_14388_42
Type: CAZyme
Location: 64150 - 66711 (+)
Type: CAZyme
Location: 64150 - 66711 (+)
Gene ID: k141_14388_43
Type: CAZyme
Location: 66727 - 69576 (+)
Type: CAZyme
Location: 66727 - 69576 (+)
Gene ID: k141_14388_44
Type: TC
Location: 69735 - 72122 (+)
Type: TC
Location: 69735 - 72122 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola sartorii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_14388_39 | vegan > omnivore | 1.84609 | 0.04214 |
| k141_14388_42 | vegan > omnivore | 1.66706 | 0.04147 |
| k141_14388_43 | vegan > omnivore | 1.95656 | 0.03879 |