Cluster: CGMR099484_CGC31
🧬 Cluster Details
- Gene Count: 32
- CAZyme Count: 17
- Substrate:
- Genome ID: CGMR099484
- CGC Family ID: CGCFAM_05200
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_159333 | k141_159333_1 | 1 | 1176 | + | GH2 |
| TC | k141_159333 | k141_159333_2 | 1371 | 4403 | + | 1.B.14.6.1 |
| sulfatase | k141_159333 | k141_159333_3 | 4423 | 6039 | + | S1_27 |
| pfam | k141_159333 | k141_159333_4 | 6288 | 7103 | + | PcRGLX_1st | PcRGLX_2nd |
| CAZyme | k141_159333 | k141_159333_5 | 7149 | 8969 | + | PL26 |
| pfam | k141_159333 | k141_159333_6 | 9346 | 10977 | + | Peptidase_S9 | Lipase_GDSL | Lipase_GDSL_2 |
| CAZyme | k141_159333 | k141_159333_7 | 11214 | 14522 | + | GH106 |
| CAZyme | k141_159333 | k141_159333_8 | 14535 | 17084 | + | GH28 | GH43_24 |
| TF | k141_159333 | k141_159333_9 | 17210 | 21469 | + | HTH_AraC |
| CAZyme | k141_159333 | k141_159333_10 | 21551 | 22555 | + | GH43_18 |
| CAZyme | k141_159333 | k141_159333_11 | 22625 | 24088 | + | GH140 |
| pfam | k141_159333 | k141_159333_12 | 24173 | 27514 | + | ResIII | AAA_11 | AAA_11 | AAA_12 | AAA_19 | AAA_30 |
| peptidase | k141_159333 | k141_159333_13 | 27600 | 29120 | + | M48.UNW |
| TC | k141_159333 | k141_159333_14 | 29239 | 30714 | - | 2.A.1.14.1 |
| pfam | k141_159333 | k141_159333_15 | 30934 | 31890 | - | KduI |
| TC | k141_159333 | k141_159333_16 | 31909 | 33300 | - | 4.A.5.1.4 |
| CAZyme | k141_159333 | k141_159333_17 | 33590 | 34819 | + | GH105 |
| CAZyme | k141_159333 | k141_159333_18 | 34831 | 35784 | + | CE8 |
| TC | k141_159333 | k141_159333_19 | 36003 | 39233 | + | 1.B.14.6.1 |
| pfam | k141_159333 | k141_159333_20 | 39237 | 41390 | + | SusD_RagB | SusD-like_3 |
| CAZyme | k141_159333 | k141_159333_21 | 42297 | 44285 | + | GH33 |
| CAZyme | k141_159333 | k141_159333_22 | 44305 | 45804 | + | CBM91 | GH43_9 |
| pfam | k141_159333 | k141_159333_23 | 45843 | 47450 | + | Apiosidase | DUF5060 | DUF5605 |
| NULL(UNKNOWN) | k141_159333 | k141_159333_24 | 47644 | 50190 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | k141_159333 | k141_159333_25 | 50253 | 51773 | + | CE8 |
| CAZyme | k141_159333 | k141_159333_26 | 51909 | 55277 | + | GH2 |
| CAZyme | k141_159333 | k141_159333_27 | 55291 | 57675 | + | GH31_9 |
| CAZyme | k141_159333 | k141_159333_28 | 57692 | 59692 | + | CE19 |
| pfam | k141_159333 | k141_159333_29 | 59783 | 60274 | - | Cupin_2 |
| CAZyme | k141_159333 | k141_159333_30 | 60463 | 62076 | + | PL10_2 |
| CAZyme | k141_159333 | k141_159333_31 | 62097 | 63257 | + | CE19 |
| CAZyme | k141_159333 | k141_159333_32 | 63282 | 64991 | + | CE12 | CE8 |
Gene ID: k141_159333_1
Type: CAZyme
Location: 1 - 1176 (+)
Type: CAZyme
Location: 1 - 1176 (+)
Gene ID: k141_159333_2
Type: TC
Location: 1371 - 4403 (+)
Type: TC
Location: 1371 - 4403 (+)
Gene ID: k141_159333_3
Type: sulfatase
Location: 4423 - 6039 (+)
Type: sulfatase
Location: 4423 - 6039 (+)
Gene ID: k141_159333_4
Type: pfam
Location: 6288 - 7103 (+)
Type: pfam
Location: 6288 - 7103 (+)
Gene ID: k141_159333_5
Type: CAZyme
Location: 7149 - 8969 (+)
Type: CAZyme
Location: 7149 - 8969 (+)
Gene ID: k141_159333_6
Type: pfam
Location: 9346 - 10977 (+)
Type: pfam
Location: 9346 - 10977 (+)
Gene ID: k141_159333_7
Type: CAZyme
Location: 11214 - 14522 (+)
Type: CAZyme
Location: 11214 - 14522 (+)
Gene ID: k141_159333_8
Type: CAZyme
Location: 14535 - 17084 (+)
Type: CAZyme
Location: 14535 - 17084 (+)
Gene ID: k141_159333_9
Type: TF
Location: 17210 - 21469 (+)
Type: TF
Location: 17210 - 21469 (+)
Gene ID: k141_159333_10
Type: CAZyme
Location: 21551 - 22555 (+)
Type: CAZyme
Location: 21551 - 22555 (+)
Gene ID: k141_159333_11
Type: CAZyme
Location: 22625 - 24088 (+)
Type: CAZyme
Location: 22625 - 24088 (+)
Gene ID: k141_159333_12
Type: pfam
Location: 24173 - 27514 (+)
Type: pfam
Location: 24173 - 27514 (+)
Gene ID: k141_159333_13
Type: peptidase
Location: 27600 - 29120 (+)
Type: peptidase
Location: 27600 - 29120 (+)
Gene ID: k141_159333_14
Type: TC
Location: 29239 - 30714 (-)
Type: TC
Location: 29239 - 30714 (-)
Gene ID: k141_159333_15
Type: pfam
Location: 30934 - 31890 (-)
Type: pfam
Location: 30934 - 31890 (-)
Gene ID: k141_159333_16
Type: TC
Location: 31909 - 33300 (-)
Type: TC
Location: 31909 - 33300 (-)
Gene ID: k141_159333_17
Type: CAZyme
Location: 33590 - 34819 (+)
Type: CAZyme
Location: 33590 - 34819 (+)
Gene ID: k141_159333_18
Type: CAZyme
Location: 34831 - 35784 (+)
Type: CAZyme
Location: 34831 - 35784 (+)
Gene ID: k141_159333_19
Type: TC
Location: 36003 - 39233 (+)
Type: TC
Location: 36003 - 39233 (+)
Gene ID: k141_159333_20
Type: pfam
Location: 39237 - 41390 (+)
Type: pfam
Location: 39237 - 41390 (+)
Gene ID: k141_159333_21
Type: CAZyme
Location: 42297 - 44285 (+)
Type: CAZyme
Location: 42297 - 44285 (+)
Gene ID: k141_159333_22
Type: CAZyme
Location: 44305 - 45804 (+)
Type: CAZyme
Location: 44305 - 45804 (+)
Gene ID: k141_159333_23
Type: pfam
Location: 45843 - 47450 (+)
Type: pfam
Location: 45843 - 47450 (+)
Gene ID: k141_159333_24
Type:
Location: 47644 - 50190 (+)
Type:
Location: 47644 - 50190 (+)
Gene ID: k141_159333_25
Type: CAZyme
Location: 50253 - 51773 (+)
Type: CAZyme
Location: 50253 - 51773 (+)
Gene ID: k141_159333_26
Type: CAZyme
Location: 51909 - 55277 (+)
Type: CAZyme
Location: 51909 - 55277 (+)
Gene ID: k141_159333_27
Type: CAZyme
Location: 55291 - 57675 (+)
Type: CAZyme
Location: 55291 - 57675 (+)
Gene ID: k141_159333_28
Type: CAZyme
Location: 57692 - 59692 (+)
Type: CAZyme
Location: 57692 - 59692 (+)
Gene ID: k141_159333_29
Type: pfam
Location: 59783 - 60274 (-)
Type: pfam
Location: 59783 - 60274 (-)
Gene ID: k141_159333_30
Type: CAZyme
Location: 60463 - 62076 (+)
Type: CAZyme
Location: 60463 - 62076 (+)
Gene ID: k141_159333_31
Type: CAZyme
Location: 62097 - 63257 (+)
Type: CAZyme
Location: 62097 - 63257 (+)
Gene ID: k141_159333_32
Type: CAZyme
Location: 63282 - 64991 (+)
Type: CAZyme
Location: 63282 - 64991 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola sartorii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_159333_1 | vegan > omnivore | 1.12068 | 0.04214 |
| k141_159333_8 | vegan > omnivore | 1.29731 | 0.04214 |
| k141_159333_8 | vegetarian > omnivore | 1.49154 | 0.04472 |
| k141_159333_9 | vegan > omnivore | 1.42684 | 0.04214 |