Cluster: CGMR098444_CGC4
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 3
- Substrate:
- Genome ID: CGMR098444
- CGC Family ID: CGCFAM_01690
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_129597 | k141_129597_33 | 41714 | 43072 | - | GH28 |
| CAZyme | k141_129597 | k141_129597_34 | 43095 | 46217 | - | GH38 |
| TC | k141_129597 | k141_129597_35 | 46294 | 47148 | - | 3.A.1.1.11 |
| TC | k141_129597 | k141_129597_36 | 47159 | 48073 | - | 3.A.1.1.11 |
| STP | k141_129597 | k141_129597_37 | 48200 | 49534 | - | SBP_bac_1 |
| TC | k141_129597 | k141_129597_38 | 49874 | 51664 | + | 9.B.33.1.1 |
| TF | k141_129597 | k141_129597_39 | 51639 | 53162 | + | HTH_AraC |
| pfam | k141_129597 | k141_129597_40 | 53188 | 54048 | - | AP_endonuc_2 |
| CAZyme | k141_129597 | k141_129597_41 | 54062 | 55216 | - | GH177 |
Gene ID: k141_129597_33
Type: CAZyme
Location: 41714 - 43072 (-)
Type: CAZyme
Location: 41714 - 43072 (-)
Gene ID: k141_129597_34
Type: CAZyme
Location: 43095 - 46217 (-)
Type: CAZyme
Location: 43095 - 46217 (-)
Gene ID: k141_129597_35
Type: TC
Location: 46294 - 47148 (-)
Type: TC
Location: 46294 - 47148 (-)
Gene ID: k141_129597_36
Type: TC
Location: 47159 - 48073 (-)
Type: TC
Location: 47159 - 48073 (-)
Gene ID: k141_129597_37
Type: STP
Location: 48200 - 49534 (-)
Type: STP
Location: 48200 - 49534 (-)
Gene ID: k141_129597_38
Type: TC
Location: 49874 - 51664 (+)
Type: TC
Location: 49874 - 51664 (+)
Gene ID: k141_129597_39
Type: TF
Location: 51639 - 53162 (+)
Type: TF
Location: 51639 - 53162 (+)
Gene ID: k141_129597_40
Type: pfam
Location: 53188 - 54048 (-)
Type: pfam
Location: 53188 - 54048 (-)
Gene ID: k141_129597_41
Type: CAZyme
Location: 54062 - 55216 (-)
Type: CAZyme
Location: 54062 - 55216 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Acetatifactor
Species
Acetatifactor acetigignens
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_129597_35 | vegan > omnivore | 1.36071 | 0.02800 |
| k141_129597_35 | vegetarian > omnivore | 1.16910 | 0.01611 |
| k141_129597_37 | vegetarian > omnivore | 1.06719 | 0.01611 |
| k141_129597_38 | vegan > omnivore | 1.10652 | 0.02171 |
| k141_129597_39 | vegetarian > omnivore | 1.00987 | 0.01611 |