Cluster: CGMR096096_CGC5
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR096096
- CGC Family ID: CGCFAM_09162
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_137213 | k141_137213_12 | 10282 | 11601 | - | 2.A.1.6.2 |
| TF | k141_137213 | k141_137213_13 | 11871 | 13205 | - | HTH_8 |
| STP | k141_137213 | k141_137213_14 | 13199 | 14956 | - | HATPase_c | HisKA | dCache_1 |
| CAZyme | k141_137213 | k141_137213_15 | 15058 | 17346 | - | GH3 |
Gene ID: k141_137213_12
Type: TC
Location: 10282 - 11601 (-)
Type: TC
Location: 10282 - 11601 (-)
Gene ID: k141_137213_13
Type: TF
Location: 11871 - 13205 (-)
Type: TF
Location: 11871 - 13205 (-)
Gene ID: k141_137213_14
Type: STP
Location: 13199 - 14956 (-)
Type: STP
Location: 13199 - 14956 (-)
Gene ID: k141_137213_15
Type: CAZyme
Location: 15058 - 17346 (-)
Type: CAZyme
Location: 15058 - 17346 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_E
Species
Pseudomonas_E shirazensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.