Cluster: CGMR096096_CGC31
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR096096
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_2012 | k141_2012_1 | 116 | 484 | - | 2.A.7.26.1 |
| pfam | k141_2012 | k141_2012_2 | 499 | 1305 | - | adh_short | KR | adh_short_C2 |
| pfam | k141_2012 | k141_2012_3 | 1509 | 1661 | + | DUF3309 |
| TC | k141_2012 | k141_2012_4 | 1743 | 3407 | - | 2.A.21.7.2 |
| TC | k141_2012 | k141_2012_5 | 3404 | 3715 | - | 9.B.136.1.1 |
| TC | k141_2012 | k141_2012_6 | 3931 | 4779 | - | 3.A.1.12.12 |
| CAZyme | k141_2012 | k141_2012_7 | 4998 | 6545 | + | GH17 |
Gene ID: k141_2012_1
Type: TC
Location: 116 - 484 (-)
Type: TC
Location: 116 - 484 (-)
Gene ID: k141_2012_2
Type: pfam
Location: 499 - 1305 (-)
Type: pfam
Location: 499 - 1305 (-)
Gene ID: k141_2012_3
Type: pfam
Location: 1509 - 1661 (+)
Type: pfam
Location: 1509 - 1661 (+)
Gene ID: k141_2012_4
Type: TC
Location: 1743 - 3407 (-)
Type: TC
Location: 1743 - 3407 (-)
Gene ID: k141_2012_5
Type: TC
Location: 3404 - 3715 (-)
Type: TC
Location: 3404 - 3715 (-)
Gene ID: k141_2012_6
Type: TC
Location: 3931 - 4779 (-)
Type: TC
Location: 3931 - 4779 (-)
Gene ID: k141_2012_7
Type: CAZyme
Location: 4998 - 6545 (+)
Type: CAZyme
Location: 4998 - 6545 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_E
Species
Pseudomonas_E shirazensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.