Cluster: CGMR096096_CGC30
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: CGMR096096
- CGC Family ID: CGCFAM_09157
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_79273 | k141_79273_50 | 55973 | 56929 | - | GT4 |
| STP | k141_79273 | k141_79273_51 | 56926 | 58386 | - | PIG-L |
| pfam | k141_79273 | k141_79273_52 | 58356 | 59255 | - | Mig-14 | Acetyltransf_6 |
| CAZyme | k141_79273 | k141_79273_53 | 59252 | 60382 | - | GT4 |
| pfam | k141_79273 | k141_79273_54 | 60366 | 62123 | - | Carbam_trans_N | Carbam_trans_C |
| pfam | k141_79273 | k141_79273_55 | 62264 | 63100 | - | RsmJ |
| TC | k141_79273 | k141_79273_56 | 63255 | 64730 | - | 2.A.21.2.3 |
Gene ID: k141_79273_50
Type: CAZyme
Location: 55973 - 56929 (-)
Type: CAZyme
Location: 55973 - 56929 (-)
Gene ID: k141_79273_51
Type: STP
Location: 56926 - 58386 (-)
Type: STP
Location: 56926 - 58386 (-)
Gene ID: k141_79273_52
Type: pfam
Location: 58356 - 59255 (-)
Type: pfam
Location: 58356 - 59255 (-)
Gene ID: k141_79273_53
Type: CAZyme
Location: 59252 - 60382 (-)
Type: CAZyme
Location: 59252 - 60382 (-)
Gene ID: k141_79273_54
Type: pfam
Location: 60366 - 62123 (-)
Type: pfam
Location: 60366 - 62123 (-)
Gene ID: k141_79273_55
Type: pfam
Location: 62264 - 63100 (-)
Type: pfam
Location: 62264 - 63100 (-)
Gene ID: k141_79273_56
Type: TC
Location: 63255 - 64730 (-)
Type: TC
Location: 63255 - 64730 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_E
Species
Pseudomonas_E shirazensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.