Cluster: CGMR096096_CGC25
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR096096
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_127499 | k141_127499_19 | 16165 | 17316 | - | GT4 |
| TC | k141_127499 | k141_127499_20 | 17485 | 19359 | - | 1.B.52.2.1 |
| pfam | k141_127499 | k141_127499_21 | 19526 | 21001 | + | DUF87 | HerA_C |
| TC | k141_127499 | k141_127499_22 | 21071 | 22543 | - | 2.A.20.1.2 |
| NULL(UNKNOWN) | k141_127499 | k141_127499_23 | 22843 | 23043 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | k141_127499 | k141_127499_24 | 23596 | 24465 | + | 0039384 |
| TC | k141_127499 | k141_127499_25 | 24752 | 26098 | + | 2.A.1.15.1 |
Gene ID: k141_127499_19
Type: CAZyme
Location: 16165 - 17316 (-)
Type: CAZyme
Location: 16165 - 17316 (-)
Gene ID: k141_127499_20
Type: TC
Location: 17485 - 19359 (-)
Type: TC
Location: 17485 - 19359 (-)
Gene ID: k141_127499_21
Type: pfam
Location: 19526 - 21001 (+)
Type: pfam
Location: 19526 - 21001 (+)
Gene ID: k141_127499_22
Type: TC
Location: 21071 - 22543 (-)
Type: TC
Location: 21071 - 22543 (-)
Gene ID: k141_127499_23
Type:
Location: 22843 - 23043 (-)
Type:
Location: 22843 - 23043 (-)
Gene ID: k141_127499_24
Type: TF
Location: 23596 - 24465 (+)
Type: TF
Location: 23596 - 24465 (+)
Gene ID: k141_127499_25
Type: TC
Location: 24752 - 26098 (+)
Type: TC
Location: 24752 - 26098 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_E
Species
Pseudomonas_E shirazensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.