Cluster: CGMR096096_CGC24
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR096096
- CGC Family ID: CGCFAM_00150
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_112360 | k141_112360_1 | 2 | 880 | + | 2.A.1.2.65 |
| STP | k141_112360 | k141_112360_2 | 944 | 1456 | + | Sigma70_r2 | Sigma70_r4_2 |
| STP | k141_112360 | k141_112360_3 | 1453 | 2400 | + | FecR |
| TC | k141_112360 | k141_112360_4 | 2503 | 4965 | + | 1.B.14.1.6 |
| sulfatase | k141_112360 | k141_112360_5 | 5064 | 7082 | - | S1_7 |
| NULL(UNKNOWN) | k141_112360 | k141_112360_6 | 7082 | 7681 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | k141_112360 | k141_112360_7 | 7681 | 8949 | - | GH33 |
Gene ID: k141_112360_1
Type: TC
Location: 2 - 880 (+)
Type: TC
Location: 2 - 880 (+)
Gene ID: k141_112360_2
Type: STP
Location: 944 - 1456 (+)
Type: STP
Location: 944 - 1456 (+)
Gene ID: k141_112360_3
Type: STP
Location: 1453 - 2400 (+)
Type: STP
Location: 1453 - 2400 (+)
Gene ID: k141_112360_4
Type: TC
Location: 2503 - 4965 (+)
Type: TC
Location: 2503 - 4965 (+)
Gene ID: k141_112360_5
Type: sulfatase
Location: 5064 - 7082 (-)
Type: sulfatase
Location: 5064 - 7082 (-)
Gene ID: k141_112360_6
Type:
Location: 7082 - 7681 (-)
Type:
Location: 7082 - 7681 (-)
Gene ID: k141_112360_7
Type: CAZyme
Location: 7681 - 8949 (-)
Type: CAZyme
Location: 7681 - 8949 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_E
Species
Pseudomonas_E shirazensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.