Cluster: CGMR096096_CGC20
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR096096
- CGC Family ID: CGCFAM_05828
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_105277 | k141_105277_31 | 29231 | 29941 | + | GT51 |
| STP | k141_105277 | k141_105277_32 | 30021 | 30875 | - | Sigma70_r2 | Sigma70_r4 |
| TC | k141_105277 | k141_105277_33 | 30980 | 32005 | - | 3.A.1.140.1 |
| TC | k141_105277 | k141_105277_34 | 32002 | 32673 | - | 3.A.1.140.1 |
| TC | k141_105277 | k141_105277_35 | 32670 | 34214 | - | 3.A.5.1.1 |
Gene ID: k141_105277_31
Type: CAZyme
Location: 29231 - 29941 (+)
Type: CAZyme
Location: 29231 - 29941 (+)
Gene ID: k141_105277_32
Type: STP
Location: 30021 - 30875 (-)
Type: STP
Location: 30021 - 30875 (-)
Gene ID: k141_105277_33
Type: TC
Location: 30980 - 32005 (-)
Type: TC
Location: 30980 - 32005 (-)
Gene ID: k141_105277_34
Type: TC
Location: 32002 - 32673 (-)
Type: TC
Location: 32002 - 32673 (-)
Gene ID: k141_105277_35
Type: TC
Location: 32670 - 34214 (-)
Type: TC
Location: 32670 - 34214 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_E
Species
Pseudomonas_E shirazensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.