Cluster: CGMR096096_CGC2
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 4
- Substrate:
- Genome ID: CGMR096096
- CGC Family ID: CGCFAM_00003
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_35995 | k141_35995_6 | 4378 | 5172 | - | GT73 |
| pfam | k141_35995 | k141_35995_7 | 5363 | 6064 | - | OMPdecase |
| pfam | k141_35995 | k141_35995_8 | 6244 | 6411 | + | DUF2897 |
| TC | k141_35995 | k141_35995_9 | 6453 | 6776 | - | 3.A.11.2.3 |
| TC | k141_35995 | k141_35995_10 | 7168 | 9138 | - | 9.B.18.2.1 |
| TC | k141_35995 | k141_35995_11 | 9228 | 10265 | - | 9.B.146.1.2 |
| pfam | k141_35995 | k141_35995_12 | 10262 | 11227 | - | 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NAD_binding_4 | NAD_binding_10 | GDP_Man_Dehyd |
| CAZyme | k141_35995 | k141_35995_13 | 11224 | 12354 | - | GT4 |
| CAZyme | k141_35995 | k141_35995_14 | 12418 | 13506 | - | GT4 |
| NULL(UNKNOWN) | k141_35995 | k141_35995_15 | 13524 | 14702 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | k141_35995 | k141_35995_16 | 14702 | 15622 | - | GT2 |
| pfam | k141_35995 | k141_35995_17 | 15612 | 16226 | - | Hexapep |
| TC | k141_35995 | k141_35995_18 | 16226 | 17473 | - | 2.A.66.2.3 |
Gene ID: k141_35995_6
Type: CAZyme
Location: 4378 - 5172 (-)
Type: CAZyme
Location: 4378 - 5172 (-)
Gene ID: k141_35995_7
Type: pfam
Location: 5363 - 6064 (-)
Type: pfam
Location: 5363 - 6064 (-)
Gene ID: k141_35995_8
Type: pfam
Location: 6244 - 6411 (+)
Type: pfam
Location: 6244 - 6411 (+)
Gene ID: k141_35995_9
Type: TC
Location: 6453 - 6776 (-)
Type: TC
Location: 6453 - 6776 (-)
Gene ID: k141_35995_10
Type: TC
Location: 7168 - 9138 (-)
Type: TC
Location: 7168 - 9138 (-)
Gene ID: k141_35995_11
Type: TC
Location: 9228 - 10265 (-)
Type: TC
Location: 9228 - 10265 (-)
Gene ID: k141_35995_12
Type: pfam
Location: 10262 - 11227 (-)
Type: pfam
Location: 10262 - 11227 (-)
Gene ID: k141_35995_13
Type: CAZyme
Location: 11224 - 12354 (-)
Type: CAZyme
Location: 11224 - 12354 (-)
Gene ID: k141_35995_14
Type: CAZyme
Location: 12418 - 13506 (-)
Type: CAZyme
Location: 12418 - 13506 (-)
Gene ID: k141_35995_15
Type:
Location: 13524 - 14702 (-)
Type:
Location: 13524 - 14702 (-)
Gene ID: k141_35995_16
Type: CAZyme
Location: 14702 - 15622 (-)
Type: CAZyme
Location: 14702 - 15622 (-)
Gene ID: k141_35995_17
Type: pfam
Location: 15612 - 16226 (-)
Type: pfam
Location: 15612 - 16226 (-)
Gene ID: k141_35995_18
Type: TC
Location: 16226 - 17473 (-)
Type: TC
Location: 16226 - 17473 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_E
Species
Pseudomonas_E shirazensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.