Cluster: CGMR096096_CGC16
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR096096
- CGC Family ID: CGCFAM_01751
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_28589 | k141_28589_1 | 13 | 2520 | + | 3.A.1.122.15 |
| pfam | k141_28589 | k141_28589_2 | 2690 | 3166 | + | GreA_GreB | GreA_GreB_N |
| NULL(UNKNOWN) | k141_28589 | k141_28589_3 | 3199 | 3507 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | k141_28589 | k141_28589_4 | 3714 | 5123 | - | GH23 |
| pfam | k141_28589 | k141_28589_5 | 5272 | 6081 | + | TatD_DNase |
| TC | k141_28589 | k141_28589_6 | 6190 | 7668 | + | 1.B.52.2.1 |
Gene ID: k141_28589_1
Type: TC
Location: 13 - 2520 (+)
Type: TC
Location: 13 - 2520 (+)
Gene ID: k141_28589_2
Type: pfam
Location: 2690 - 3166 (+)
Type: pfam
Location: 2690 - 3166 (+)
Gene ID: k141_28589_3
Type:
Location: 3199 - 3507 (-)
Type:
Location: 3199 - 3507 (-)
Gene ID: k141_28589_4
Type: CAZyme
Location: 3714 - 5123 (-)
Type: CAZyme
Location: 3714 - 5123 (-)
Gene ID: k141_28589_5
Type: pfam
Location: 5272 - 6081 (+)
Type: pfam
Location: 5272 - 6081 (+)
Gene ID: k141_28589_6
Type: TC
Location: 6190 - 7668 (+)
Type: TC
Location: 6190 - 7668 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_E
Species
Pseudomonas_E shirazensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.