Cluster: CGMR096096_CGC12
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR096096
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_152404 | k141_152404_6 | 5284 | 6363 | - | GT28 |
| TC | k141_152404 | k141_152404_7 | 6353 | 7570 | - | 2.A.103.1.1 |
| pfam | k141_152404 | k141_152404_8 | 7567 | 8913 | - | Mur_ligase_C | Mur_ligase_M | MurD-like_N |
| TC | k141_152404 | k141_152404_9 | 8920 | 10002 | - | 9.B.146.1.6 |
Gene ID: k141_152404_6
Type: CAZyme
Location: 5284 - 6363 (-)
Type: CAZyme
Location: 5284 - 6363 (-)
Gene ID: k141_152404_7
Type: TC
Location: 6353 - 7570 (-)
Type: TC
Location: 6353 - 7570 (-)
Gene ID: k141_152404_8
Type: pfam
Location: 7567 - 8913 (-)
Type: pfam
Location: 7567 - 8913 (-)
Gene ID: k141_152404_9
Type: TC
Location: 8920 - 10002 (-)
Type: TC
Location: 8920 - 10002 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_E
Species
Pseudomonas_E shirazensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.