Cluster: CGMR096096_CGC1
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR096096
- CGC Family ID: CGCFAM_00359
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_43781 | k141_43781_15 | 18556 | 19884 | + | 1.B.52.2.2 |
| TC | k141_43781 | k141_43781_16 | 19913 | 21523 | - | 3.A.1.5.21 |
| TC | k141_43781 | k141_43781_17 | 21525 | 22544 | - | 3.A.1.5.21 |
| TC | k141_43781 | k141_43781_18 | 22548 | 23621 | - | 3.A.1.5.24 |
| TC | k141_43781 | k141_43781_19 | 23623 | 25470 | - | 3.A.1.5.24 |
| TC | k141_43781 | k141_43781_20 | 25467 | 27296 | - | 3.A.1.5.21 |
| CAZyme | k141_43781 | k141_43781_21 | 27419 | 28849 | - | GH23 |
Gene ID: k141_43781_15
Type: TC
Location: 18556 - 19884 (+)
Type: TC
Location: 18556 - 19884 (+)
Gene ID: k141_43781_16
Type: TC
Location: 19913 - 21523 (-)
Type: TC
Location: 19913 - 21523 (-)
Gene ID: k141_43781_17
Type: TC
Location: 21525 - 22544 (-)
Type: TC
Location: 21525 - 22544 (-)
Gene ID: k141_43781_18
Type: TC
Location: 22548 - 23621 (-)
Type: TC
Location: 22548 - 23621 (-)
Gene ID: k141_43781_19
Type: TC
Location: 23623 - 25470 (-)
Type: TC
Location: 23623 - 25470 (-)
Gene ID: k141_43781_20
Type: TC
Location: 25467 - 27296 (-)
Type: TC
Location: 25467 - 27296 (-)
Gene ID: k141_43781_21
Type: CAZyme
Location: 27419 - 28849 (-)
Type: CAZyme
Location: 27419 - 28849 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_E
Species
Pseudomonas_E shirazensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.