Cluster: CGMR093085_CGC29
🧬 Cluster Details
- Gene Count: 23
- CAZyme Count: 13
- Substrate:
- Genome ID: CGMR093085
- CGC Family ID: CGCFAM_00894
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_100294 | k141_100294_99 | 105716 | 106783 | - | GT2 |
| CAZyme | k141_100294 | k141_100294_100 | 106788 | 107957 | - | GT4 |
| CAZyme | k141_100294 | k141_100294_101 | 107954 | 108856 | - | GT2 |
| CAZyme | k141_100294 | k141_100294_102 | 108853 | 109950 | - | GT4 |
| CAZyme | k141_100294 | k141_100294_103 | 109968 | 111008 | - | GT2 |
| CAZyme | k141_100294 | k141_100294_104 | 111005 | 112120 | - | GT4 |
| CAZyme | k141_100294 | k141_100294_105 | 112122 | 113309 | - | GT4 |
| NULL(UNKNOWN) | k141_100294 | k141_100294_106 | 113306 | 114820 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | k141_100294 | k141_100294_107 | 114817 | 116007 | - | GH105 |
| pfam | k141_100294 | k141_100294_108 | 116004 | 117173 | - | PS_pyruv_trans |
| CAZyme | k141_100294 | k141_100294_109 | 117185 | 118192 | - | GT2 |
| CAZyme | k141_100294 | k141_100294_110 | 118199 | 119347 | - | GT4 |
| CAZyme | k141_100294 | k141_100294_111 | 119344 | 120474 | - | GT4 |
| TC | k141_100294 | k141_100294_112 | 120485 | 122878 | - | 8.A.3.3.4 |
| TC | k141_100294 | k141_100294_113 | 122883 | 123668 | - | 1.B.18.3.8 |
| TC | k141_100294 | k141_100294_114 | 123688 | 125670 | - | 9.B.18.2.1 |
| pfam | k141_100294 | k141_100294_115 | 125682 | 127469 | - | Aminotran_1_2 | DegT_DnrJ_EryC1 | Beta_elim_lyase | PglD_N |
| TC | k141_100294 | k141_100294_116 | 127466 | 128077 | - | 9.B.18.1.2 |
| CAZyme | k141_100294 | k141_100294_117 | 128074 | 129192 | - | GT4 |
| pfam | k141_100294 | k141_100294_118 | 129189 | 130319 | - | EpsG |
| CAZyme | k141_100294 | k141_100294_119 | 130713 | 131828 | + | GT2 |
| TC | k141_100294 | k141_100294_120 | 131980 | 133464 | + | 3.A.1.3.17 |
| TC | k141_100294 | k141_100294_121 | 133484 | 134206 | + | 3.A.1.3.15 |
Gene ID: k141_100294_99
Type: CAZyme
Location: 105716 - 106783 (-)
Type: CAZyme
Location: 105716 - 106783 (-)
Gene ID: k141_100294_100
Type: CAZyme
Location: 106788 - 107957 (-)
Type: CAZyme
Location: 106788 - 107957 (-)
Gene ID: k141_100294_101
Type: CAZyme
Location: 107954 - 108856 (-)
Type: CAZyme
Location: 107954 - 108856 (-)
Gene ID: k141_100294_102
Type: CAZyme
Location: 108853 - 109950 (-)
Type: CAZyme
Location: 108853 - 109950 (-)
Gene ID: k141_100294_103
Type: CAZyme
Location: 109968 - 111008 (-)
Type: CAZyme
Location: 109968 - 111008 (-)
Gene ID: k141_100294_104
Type: CAZyme
Location: 111005 - 112120 (-)
Type: CAZyme
Location: 111005 - 112120 (-)
Gene ID: k141_100294_105
Type: CAZyme
Location: 112122 - 113309 (-)
Type: CAZyme
Location: 112122 - 113309 (-)
Gene ID: k141_100294_106
Type:
Location: 113306 - 114820 (-)
Type:
Location: 113306 - 114820 (-)
Gene ID: k141_100294_107
Type: CAZyme
Location: 114817 - 116007 (-)
Type: CAZyme
Location: 114817 - 116007 (-)
Gene ID: k141_100294_108
Type: pfam
Location: 116004 - 117173 (-)
Type: pfam
Location: 116004 - 117173 (-)
Gene ID: k141_100294_109
Type: CAZyme
Location: 117185 - 118192 (-)
Type: CAZyme
Location: 117185 - 118192 (-)
Gene ID: k141_100294_110
Type: CAZyme
Location: 118199 - 119347 (-)
Type: CAZyme
Location: 118199 - 119347 (-)
Gene ID: k141_100294_111
Type: CAZyme
Location: 119344 - 120474 (-)
Type: CAZyme
Location: 119344 - 120474 (-)
Gene ID: k141_100294_112
Type: TC
Location: 120485 - 122878 (-)
Type: TC
Location: 120485 - 122878 (-)
Gene ID: k141_100294_113
Type: TC
Location: 122883 - 123668 (-)
Type: TC
Location: 122883 - 123668 (-)
Gene ID: k141_100294_114
Type: TC
Location: 123688 - 125670 (-)
Type: TC
Location: 123688 - 125670 (-)
Gene ID: k141_100294_115
Type: pfam
Location: 125682 - 127469 (-)
Type: pfam
Location: 125682 - 127469 (-)
Gene ID: k141_100294_116
Type: TC
Location: 127466 - 128077 (-)
Type: TC
Location: 127466 - 128077 (-)
Gene ID: k141_100294_117
Type: CAZyme
Location: 128074 - 129192 (-)
Type: CAZyme
Location: 128074 - 129192 (-)
Gene ID: k141_100294_118
Type: pfam
Location: 129189 - 130319 (-)
Type: pfam
Location: 129189 - 130319 (-)
Gene ID: k141_100294_119
Type: CAZyme
Location: 130713 - 131828 (+)
Type: CAZyme
Location: 130713 - 131828 (+)
Gene ID: k141_100294_120
Type: TC
Location: 131980 - 133464 (+)
Type: TC
Location: 131980 - 133464 (+)
Gene ID: k141_100294_121
Type: TC
Location: 133484 - 134206 (+)
Type: TC
Location: 133484 - 134206 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Verrucomicrobiota
Class
Verrucomicrobiae
Order
Verrucomicrobiales
Family
Akkermansiaceae
Genus
Akkermansia
Species
Akkermansia muciniphila_E
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.