Cluster: CGMR093085_CGC19
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 4
- Substrate: host glycan
- Genome ID: CGMR093085
- CGC Family ID: CGCFAM_01239
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_63582 | k141_63582_2 | 1503 | 4085 | - | 3.A.9.1.2 |
| CAZyme | k141_63582 | k141_63582_3 | 4275 | 5879 | + | GH27 |
| TC | k141_63582 | k141_63582_4 | 6031 | 6597 | - | 3.A.3.7.2 |
| TC | k141_63582 | k141_63582_5 | 6627 | 8741 | - | 3.A.3.7.2 |
| TC | k141_63582 | k141_63582_6 | 8772 | 10472 | - | 3.A.3.7.2 |
| TC | k141_63582 | k141_63582_7 | 10586 | 11365 | - | 1.B.71.1.5 |
| TF | k141_63582 | k141_63582_8 | 11520 | 12218 | - | Trans_reg_C |
| STP | k141_63582 | k141_63582_9 | 12233 | 14908 | - | HATPase_c | HisKA |
| CAZyme | k141_63582 | k141_63582_10 | 15101 | 18238 | + | GH33 |
| NULL(UNKNOWN) | k141_63582 | k141_63582_11 | 18502 | 19533 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | k141_63582 | k141_63582_12 | 19548 | 20216 | + | PEP-CTERM |
| CAZyme | k141_63582 | k141_63582_13 | 20548 | 24342 | - | CBM32 | GH2 |
| pfam | k141_63582 | k141_63582_14 | 24482 | 25543 | - | LpxR |
| pfam | k141_63582 | k141_63582_15 | 25668 | 26483 | + | TatD_DNase |
| CAZyme | k141_63582 | k141_63582_16 | 26553 | 27041 | + | CBM50 |
Gene ID: k141_63582_2
Type: TC
Location: 1503 - 4085 (-)
Type: TC
Location: 1503 - 4085 (-)
Gene ID: k141_63582_3
Type: CAZyme
Location: 4275 - 5879 (+)
Type: CAZyme
Location: 4275 - 5879 (+)
Gene ID: k141_63582_4
Type: TC
Location: 6031 - 6597 (-)
Type: TC
Location: 6031 - 6597 (-)
Gene ID: k141_63582_5
Type: TC
Location: 6627 - 8741 (-)
Type: TC
Location: 6627 - 8741 (-)
Gene ID: k141_63582_6
Type: TC
Location: 8772 - 10472 (-)
Type: TC
Location: 8772 - 10472 (-)
Gene ID: k141_63582_7
Type: TC
Location: 10586 - 11365 (-)
Type: TC
Location: 10586 - 11365 (-)
Gene ID: k141_63582_8
Type: TF
Location: 11520 - 12218 (-)
Type: TF
Location: 11520 - 12218 (-)
Gene ID: k141_63582_9
Type: STP
Location: 12233 - 14908 (-)
Type: STP
Location: 12233 - 14908 (-)
Gene ID: k141_63582_10
Type: CAZyme
Location: 15101 - 18238 (+)
Type: CAZyme
Location: 15101 - 18238 (+)
Gene ID: k141_63582_11
Type:
Location: 18502 - 19533 (+)
Type:
Location: 18502 - 19533 (+)
Gene ID: k141_63582_12
Type: pfam
Location: 19548 - 20216 (+)
Type: pfam
Location: 19548 - 20216 (+)
Gene ID: k141_63582_13
Type: CAZyme
Location: 20548 - 24342 (-)
Type: CAZyme
Location: 20548 - 24342 (-)
Gene ID: k141_63582_14
Type: pfam
Location: 24482 - 25543 (-)
Type: pfam
Location: 24482 - 25543 (-)
Gene ID: k141_63582_15
Type: pfam
Location: 25668 - 26483 (+)
Type: pfam
Location: 25668 - 26483 (+)
Gene ID: k141_63582_16
Type: CAZyme
Location: 26553 - 27041 (+)
Type: CAZyme
Location: 26553 - 27041 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Verrucomicrobiota
Class
Verrucomicrobiae
Order
Verrucomicrobiales
Family
Akkermansiaceae
Genus
Akkermansia
Species
Akkermansia muciniphila_E
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.