Cluster: CGMR093085_CGC18
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR093085
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_89623 | k141_89623_54 | 64477 | 65580 | + | 9.B.146.1.3 |
| pfam | k141_89623 | k141_89623_55 | 65593 | 66903 | + | Mur_ligase_C | Mur_ligase_M | MurD-like_N |
| pfam | k141_89623 | k141_89623_56 | 66927 | 67739 | + | LysM | LysM |
| TC | k141_89623 | k141_89623_57 | 67768 | 68910 | + | 2.A.103.1.1 |
| CAZyme | k141_89623 | k141_89623_58 | 68907 | 70031 | + | GT28 |
Gene ID: k141_89623_54
Type: TC
Location: 64477 - 65580 (+)
Type: TC
Location: 64477 - 65580 (+)
Gene ID: k141_89623_55
Type: pfam
Location: 65593 - 66903 (+)
Type: pfam
Location: 65593 - 66903 (+)
Gene ID: k141_89623_56
Type: pfam
Location: 66927 - 67739 (+)
Type: pfam
Location: 66927 - 67739 (+)
Gene ID: k141_89623_57
Type: TC
Location: 67768 - 68910 (+)
Type: TC
Location: 67768 - 68910 (+)
Gene ID: k141_89623_58
Type: CAZyme
Location: 68907 - 70031 (+)
Type: CAZyme
Location: 68907 - 70031 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Verrucomicrobiota
Class
Verrucomicrobiae
Order
Verrucomicrobiales
Family
Akkermansiaceae
Genus
Akkermansia
Species
Akkermansia muciniphila_E
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_89623_54 | vegetarian > omnivore | 2.47262 | 0.03393 |
| k141_89623_54 | vegetarian > vegan | 1.84627 | 0.00855 |