Cluster: CGMR091553_CGC8
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: CGMR091553
- CGC Family ID: CGCFAM_00309
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_14234 | k141_14234_9 | 9888 | 12110 | + | GT51 |
| NULL(UNKNOWN) | k141_14234 | k141_14234_10 | 12226 | 12348 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | k141_14234 | k141_14234_11 | 12345 | 12782 | - | Arg_repressor |
| CAZyme | k141_14234 | k141_14234_12 | 12994 | 14055 | - | GT2 |
| pfam | k141_14234 | k141_14234_13 | 14160 | 15032 | - | PseudoU_synth_1 | PseudoU_synth_1 |
| TC | k141_14234 | k141_14234_14 | 15062 | 15859 | - | 3.A.1.26.10 |
| TC | k141_14234 | k141_14234_15 | 15856 | 17535 | - | 3.A.1.33.1 |
Gene ID: k141_14234_9
Type: CAZyme
Location: 9888 - 12110 (+)
Type: CAZyme
Location: 9888 - 12110 (+)
Gene ID: k141_14234_10
Type:
Location: 12226 - 12348 (-)
Type:
Location: 12226 - 12348 (-)
Gene ID: k141_14234_11
Type: TF
Location: 12345 - 12782 (-)
Type: TF
Location: 12345 - 12782 (-)
Gene ID: k141_14234_12
Type: CAZyme
Location: 12994 - 14055 (-)
Type: CAZyme
Location: 12994 - 14055 (-)
Gene ID: k141_14234_13
Type: pfam
Location: 14160 - 15032 (-)
Type: pfam
Location: 14160 - 15032 (-)
Gene ID: k141_14234_14
Type: TC
Location: 15062 - 15859 (-)
Type: TC
Location: 15062 - 15859 (-)
Gene ID: k141_14234_15
Type: TC
Location: 15856 - 17535 (-)
Type: TC
Location: 15856 - 17535 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella stercoripullorum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.