Cluster: CGMR088541_CGC6
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 6
- Substrate:
- Genome ID: CGMR088541
- CGC Family ID: CGCFAM_05460
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_4732 | k141_4732_1 | 67 | 1980 | - | 9.B.18.2.1 |
| CAZyme | k141_4732 | k141_4732_2 | 2064 | 3155 | - | GT4 |
| pfam | k141_4732 | k141_4732_3 | 3161 | 4456 | - | UDPG_MGDP_dh | UDPG_MGDP_dh_C | UDPG_MGDP_dh_N |
| CAZyme | k141_4732 | k141_4732_4 | 4482 | 5234 | - | GT2 |
| CAZyme | k141_4732 | k141_4732_5 | 5282 | 6190 | - | GT2 |
| CAZyme | k141_4732 | k141_4732_6 | 6212 | 6961 | - | GT2 |
| pfam | k141_4732 | k141_4732_7 | 6990 | 8165 | - | Glyphos_transf |
| CAZyme | k141_4732 | k141_4732_8 | 8180 | 9019 | - | GT2 |
| NULL(UNKNOWN) | k141_4732 | k141_4732_9 | 9022 | 10179 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | k141_4732 | k141_4732_10 | 10195 | 10917 | - | GT32 |
| pfam | k141_4732 | k141_4732_11 | 10929 | 12002 | - | NTP_transferase | ManC_GMP_beta-helix |
| pfam | k141_4732 | k141_4732_12 | 12024 | 13730 | - | PGM_PMM_IV | PGM_PMM_I | PGM_PMM_II | PGM_PMM_III |
| TC | k141_4732 | k141_4732_13 | 13776 | 15332 | - | 2.A.66.4.1 |
| pfam | k141_4732 | k141_4732_14 | 15447 | 16502 | - | CW_binding_2 | CW_binding_2 |
| TC | k141_4732 | k141_4732_15 | 16597 | 17283 | - | 9.B.18.1.3 |
Gene ID: k141_4732_1
Type: TC
Location: 67 - 1980 (-)
Type: TC
Location: 67 - 1980 (-)
Gene ID: k141_4732_2
Type: CAZyme
Location: 2064 - 3155 (-)
Type: CAZyme
Location: 2064 - 3155 (-)
Gene ID: k141_4732_3
Type: pfam
Location: 3161 - 4456 (-)
Type: pfam
Location: 3161 - 4456 (-)
Gene ID: k141_4732_4
Type: CAZyme
Location: 4482 - 5234 (-)
Type: CAZyme
Location: 4482 - 5234 (-)
Gene ID: k141_4732_5
Type: CAZyme
Location: 5282 - 6190 (-)
Type: CAZyme
Location: 5282 - 6190 (-)
Gene ID: k141_4732_6
Type: CAZyme
Location: 6212 - 6961 (-)
Type: CAZyme
Location: 6212 - 6961 (-)
Gene ID: k141_4732_7
Type: pfam
Location: 6990 - 8165 (-)
Type: pfam
Location: 6990 - 8165 (-)
Gene ID: k141_4732_8
Type: CAZyme
Location: 8180 - 9019 (-)
Type: CAZyme
Location: 8180 - 9019 (-)
Gene ID: k141_4732_9
Type:
Location: 9022 - 10179 (-)
Type:
Location: 9022 - 10179 (-)
Gene ID: k141_4732_10
Type: CAZyme
Location: 10195 - 10917 (-)
Type: CAZyme
Location: 10195 - 10917 (-)
Gene ID: k141_4732_11
Type: pfam
Location: 10929 - 12002 (-)
Type: pfam
Location: 10929 - 12002 (-)
Gene ID: k141_4732_12
Type: pfam
Location: 12024 - 13730 (-)
Type: pfam
Location: 12024 - 13730 (-)
Gene ID: k141_4732_13
Type: TC
Location: 13776 - 15332 (-)
Type: TC
Location: 13776 - 15332 (-)
Gene ID: k141_4732_14
Type: pfam
Location: 15447 - 16502 (-)
Type: pfam
Location: 15447 - 16502 (-)
Gene ID: k141_4732_15
Type: TC
Location: 16597 - 17283 (-)
Type: TC
Location: 16597 - 17283 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Peptostreptococcales
Family
Peptostreptococcaceae
Genus
Clostridioides
Species
Clostridioides difficile
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.