Cluster: CGMR088541_CGC19
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate: host glycan/beta-glucan
- Genome ID: CGMR088541
- CGC Family ID: CGCFAM_00012
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_15096 | k141_15096_14 | 19528 | 20760 | + | 4.A.3.2.2 |
| pfam | k141_15096 | k141_15096_15 | 20789 | 21142 | + | PTS_IIA |
| CAZyme | k141_15096 | k141_15096_16 | 21173 | 22609 | + | GH1 |
| TF | k141_15096 | k141_15096_17 | 23001 | 23753 | + | HTH_6 |
| STP | k141_15096 | k141_15096_18 | 23855 | 24775 | + | PfkB |
| TC | k141_15096 | k141_15096_19 | 24778 | 26694 | + | 4.A.2.1.19 |
Gene ID: k141_15096_14
Type: TC
Location: 19528 - 20760 (+)
Type: TC
Location: 19528 - 20760 (+)
Gene ID: k141_15096_15
Type: pfam
Location: 20789 - 21142 (+)
Type: pfam
Location: 20789 - 21142 (+)
Gene ID: k141_15096_16
Type: CAZyme
Location: 21173 - 22609 (+)
Type: CAZyme
Location: 21173 - 22609 (+)
Gene ID: k141_15096_17
Type: TF
Location: 23001 - 23753 (+)
Type: TF
Location: 23001 - 23753 (+)
Gene ID: k141_15096_18
Type: STP
Location: 23855 - 24775 (+)
Type: STP
Location: 23855 - 24775 (+)
Gene ID: k141_15096_19
Type: TC
Location: 24778 - 26694 (+)
Type: TC
Location: 24778 - 26694 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Peptostreptococcales
Family
Peptostreptococcaceae
Genus
Clostridioides
Species
Clostridioides difficile
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.