Cluster: CGMR087432_CGC7
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 4
- Substrate:
- Genome ID: CGMR087432
- CGC Family ID: CGCFAM_00006
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_1911 | k141_1911_11 | 11095 | 11595 | + | 2.A.88.9.1 |
| NULL(UNKNOWN) | k141_1911 | k141_1911_12 | 11878 | 12597 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | k141_1911 | k141_1911_13 | 12957 | 13886 | + | 8.A.3.2.4 |
| TC | k141_1911 | k141_1911_14 | 13901 | 14659 | + | 8.A.3.2.1 |
| CAZyme | k141_1911 | k141_1911_15 | 14798 | 15979 | + | GT4 |
| CAZyme | k141_1911 | k141_1911_16 | 15966 | 17123 | + | GT4 |
| CAZyme | k141_1911 | k141_1911_17 | 17245 | 18219 | + | GT2 |
| NULL(UNKNOWN) | k141_1911 | k141_1911_18 | 18259 | 19518 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | k141_1911 | k141_1911_19 | 19653 | 20318 | + | Hexapep | Hexapep_2 |
| TC | k141_1911 | k141_1911_20 | 21019 | 22455 | + | 2.A.66.2.16 |
| CAZyme | k141_1911 | k141_1911_21 | 22477 | 23343 | + | GT2 |
| TC | k141_1911 | k141_1911_22 | 23486 | 24154 | + | 9.B.18.1.2 |
Gene ID: k141_1911_11
Type: TC
Location: 11095 - 11595 (+)
Type: TC
Location: 11095 - 11595 (+)
Gene ID: k141_1911_12
Type:
Location: 11878 - 12597 (-)
Type:
Location: 11878 - 12597 (-)
Gene ID: k141_1911_13
Type: TC
Location: 12957 - 13886 (+)
Type: TC
Location: 12957 - 13886 (+)
Gene ID: k141_1911_14
Type: TC
Location: 13901 - 14659 (+)
Type: TC
Location: 13901 - 14659 (+)
Gene ID: k141_1911_15
Type: CAZyme
Location: 14798 - 15979 (+)
Type: CAZyme
Location: 14798 - 15979 (+)
Gene ID: k141_1911_16
Type: CAZyme
Location: 15966 - 17123 (+)
Type: CAZyme
Location: 15966 - 17123 (+)
Gene ID: k141_1911_17
Type: CAZyme
Location: 17245 - 18219 (+)
Type: CAZyme
Location: 17245 - 18219 (+)
Gene ID: k141_1911_18
Type:
Location: 18259 - 19518 (+)
Type:
Location: 18259 - 19518 (+)
Gene ID: k141_1911_19
Type: pfam
Location: 19653 - 20318 (+)
Type: pfam
Location: 19653 - 20318 (+)
Gene ID: k141_1911_20
Type: TC
Location: 21019 - 22455 (+)
Type: TC
Location: 21019 - 22455 (+)
Gene ID: k141_1911_21
Type: CAZyme
Location: 22477 - 23343 (+)
Type: CAZyme
Location: 22477 - 23343 (+)
Gene ID: k141_1911_22
Type: TC
Location: 23486 - 24154 (+)
Type: TC
Location: 23486 - 24154 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Lacticaseibacillus
Species
Lacticaseibacillus paracasei
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.