Cluster: CGMR087432_CGC3
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 4
- Substrate:
- Genome ID: CGMR087432
- CGC Family ID: CGCFAM_06383
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_96827 | k141_96827_5 | 4859 | 7009 | + | 3.A.9.1.2 |
| pfam | k141_96827 | k141_96827_6 | 7643 | 8044 | + | ArsC |
| pfam | k141_96827 | k141_96827_7 | 8477 | 10408 | + | FBPase_2 |
| TC | k141_96827 | k141_96827_8 | 10875 | 11705 | + | 2.A.115.1.1 |
| pfam | k141_96827 | k141_96827_9 | 12064 | 12966 | + | Sortase |
| pfam | k141_96827 | k141_96827_10 | 13233 | 14264 | - | Aminotran_4 |
| CAZyme | k141_96827 | k141_96827_11 | 14641 | 16740 | + | CBM48 | GH13_9 |
| pfam | k141_96827 | k141_96827_12 | 16737 | 17879 | + | NTP_transferase | NTP_transf_3 | Hexapep_GlmU |
| pfam | k141_96827 | k141_96827_13 | 17876 | 19045 | + | NTP_transferase | Hexapep_GlmU |
| CAZyme | k141_96827 | k141_96827_14 | 19038 | 20483 | + | GT5 |
| CAZyme | k141_96827 | k141_96827_15 | 20699 | 23107 | + | GT35 |
| CAZyme | k141_96827 | k141_96827_16 | 23357 | 25135 | + | GH13_39 |
| sulfatase | k141_96827 | k141_96827_17 | 25583 | 26512 | - | S1_16 |
| TF | k141_96827 | k141_96827_18 | 26687 | 27022 | + | HTH_5 |
| TC | k141_96827 | k141_96827_19 | 27197 | 28141 | + | 2.A.4.7.9 |
Gene ID: k141_96827_5
Type: TC
Location: 4859 - 7009 (+)
Type: TC
Location: 4859 - 7009 (+)
Gene ID: k141_96827_6
Type: pfam
Location: 7643 - 8044 (+)
Type: pfam
Location: 7643 - 8044 (+)
Gene ID: k141_96827_7
Type: pfam
Location: 8477 - 10408 (+)
Type: pfam
Location: 8477 - 10408 (+)
Gene ID: k141_96827_8
Type: TC
Location: 10875 - 11705 (+)
Type: TC
Location: 10875 - 11705 (+)
Gene ID: k141_96827_9
Type: pfam
Location: 12064 - 12966 (+)
Type: pfam
Location: 12064 - 12966 (+)
Gene ID: k141_96827_10
Type: pfam
Location: 13233 - 14264 (-)
Type: pfam
Location: 13233 - 14264 (-)
Gene ID: k141_96827_11
Type: CAZyme
Location: 14641 - 16740 (+)
Type: CAZyme
Location: 14641 - 16740 (+)
Gene ID: k141_96827_12
Type: pfam
Location: 16737 - 17879 (+)
Type: pfam
Location: 16737 - 17879 (+)
Gene ID: k141_96827_13
Type: pfam
Location: 17876 - 19045 (+)
Type: pfam
Location: 17876 - 19045 (+)
Gene ID: k141_96827_14
Type: CAZyme
Location: 19038 - 20483 (+)
Type: CAZyme
Location: 19038 - 20483 (+)
Gene ID: k141_96827_15
Type: CAZyme
Location: 20699 - 23107 (+)
Type: CAZyme
Location: 20699 - 23107 (+)
Gene ID: k141_96827_16
Type: CAZyme
Location: 23357 - 25135 (+)
Type: CAZyme
Location: 23357 - 25135 (+)
Gene ID: k141_96827_17
Type: sulfatase
Location: 25583 - 26512 (-)
Type: sulfatase
Location: 25583 - 26512 (-)
Gene ID: k141_96827_18
Type: TF
Location: 26687 - 27022 (+)
Type: TF
Location: 26687 - 27022 (+)
Gene ID: k141_96827_19
Type: TC
Location: 27197 - 28141 (+)
Type: TC
Location: 27197 - 28141 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Lacticaseibacillus
Species
Lacticaseibacillus paracasei
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.