Cluster: CGMR087432_CGC12
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate: host glycan/beta-glucan
- Genome ID: CGMR087432
- CGC Family ID: CGCFAM_00020
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_84693 | k141_84693_2 | 1054 | 2745 | + | 3.A.1.106.12 |
| TC | k141_84693 | k141_84693_3 | 2742 | 4373 | + | 3.A.1.106.11 |
| pfam | k141_84693 | k141_84693_4 | 4511 | 5368 | + | PRD | PRD | CAT_RBD |
| TC | k141_84693 | k141_84693_5 | 5820 | 7658 | + | 4.A.1.2.2 |
| CAZyme | k141_84693 | k141_84693_6 | 7829 | 9277 | + | GH1 |
| STP | k141_84693 | k141_84693_7 | 9404 | 9970 | + | TetR_N |
| TC | k141_84693 | k141_84693_8 | 10261 | 11679 | + | 2.A.1.3.30 |
Gene ID: k141_84693_2
Type: TC
Location: 1054 - 2745 (+)
Type: TC
Location: 1054 - 2745 (+)
Gene ID: k141_84693_3
Type: TC
Location: 2742 - 4373 (+)
Type: TC
Location: 2742 - 4373 (+)
Gene ID: k141_84693_4
Type: pfam
Location: 4511 - 5368 (+)
Type: pfam
Location: 4511 - 5368 (+)
Gene ID: k141_84693_5
Type: TC
Location: 5820 - 7658 (+)
Type: TC
Location: 5820 - 7658 (+)
Gene ID: k141_84693_6
Type: CAZyme
Location: 7829 - 9277 (+)
Type: CAZyme
Location: 7829 - 9277 (+)
Gene ID: k141_84693_7
Type: STP
Location: 9404 - 9970 (+)
Type: STP
Location: 9404 - 9970 (+)
Gene ID: k141_84693_8
Type: TC
Location: 10261 - 11679 (+)
Type: TC
Location: 10261 - 11679 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Lacticaseibacillus
Species
Lacticaseibacillus paracasei
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.