Cluster: CGMR085333_CGC5
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 5
- Substrate: host glycan
- Genome ID: CGMR085333
- CGC Family ID: CGCFAM_00016
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_65164 | k141_65164_12 | 19752 | 20678 | + | GH128 |
| CAZyme | k141_65164 | k141_65164_13 | 20709 | 22505 | + | GH2 |
| CAZyme | k141_65164 | k141_65164_14 | 22607 | 23866 | + | GH5_46 |
| STP | k141_65164 | k141_65164_15 | 24395 | 24940 | + | Sigma70_r2 | Sigma70_r4_2 |
| STP | k141_65164 | k141_65164_16 | 25054 | 26007 | + | FecR |
| TC | k141_65164 | k141_65164_17 | 26179 | 29499 | + | 1.B.14.6.13 |
| pfam | k141_65164 | k141_65164_18 | 29515 | 29832 | + | SusD-like |
| TC | k141_65164 | k141_65164_19 | 29941 | 31113 | + | 8.A.46.2.2 |
| pfam | k141_65164 | k141_65164_20 | 31119 | 32051 | + | GH18_BT1044-like | GH18_BT1044-like |
| pfam | k141_65164 | k141_65164_21 | 32060 | 33403 | + | BT_3987-like_N | Laminin_G_3 |
| CAZyme | k141_65164 | k141_65164_22 | 33419 | 34999 | + | GH18 |
| CAZyme | k141_65164 | k141_65164_23 | 35499 | 37049 | + | GH29 |
Gene ID: k141_65164_12
Type: CAZyme
Location: 19752 - 20678 (+)
Type: CAZyme
Location: 19752 - 20678 (+)
Gene ID: k141_65164_13
Type: CAZyme
Location: 20709 - 22505 (+)
Type: CAZyme
Location: 20709 - 22505 (+)
Gene ID: k141_65164_14
Type: CAZyme
Location: 22607 - 23866 (+)
Type: CAZyme
Location: 22607 - 23866 (+)
Gene ID: k141_65164_15
Type: STP
Location: 24395 - 24940 (+)
Type: STP
Location: 24395 - 24940 (+)
Gene ID: k141_65164_16
Type: STP
Location: 25054 - 26007 (+)
Type: STP
Location: 25054 - 26007 (+)
Gene ID: k141_65164_17
Type: TC
Location: 26179 - 29499 (+)
Type: TC
Location: 26179 - 29499 (+)
Gene ID: k141_65164_18
Type: pfam
Location: 29515 - 29832 (+)
Type: pfam
Location: 29515 - 29832 (+)
Gene ID: k141_65164_19
Type: TC
Location: 29941 - 31113 (+)
Type: TC
Location: 29941 - 31113 (+)
Gene ID: k141_65164_20
Type: pfam
Location: 31119 - 32051 (+)
Type: pfam
Location: 31119 - 32051 (+)
Gene ID: k141_65164_21
Type: pfam
Location: 32060 - 33403 (+)
Type: pfam
Location: 32060 - 33403 (+)
Gene ID: k141_65164_22
Type: CAZyme
Location: 33419 - 34999 (+)
Type: CAZyme
Location: 33419 - 34999 (+)
Gene ID: k141_65164_23
Type: CAZyme
Location: 35499 - 37049 (+)
Type: CAZyme
Location: 35499 - 37049 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
WRDF01
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.