Cluster: CGMR085333_CGC27
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 4
- Substrate: pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
- Genome ID: CGMR085333
- CGC Family ID: CGCFAM_00001
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_156404 | k141_156404_1 | 286 | 1725 | + | CE20 |
| TF | k141_156404 | k141_156404_2 | 2226 | 5012 | - | GerE |
| TC | k141_156404 | k141_156404_3 | 5296 | 8424 | + | 1.B.14.6.1 |
| pfam | k141_156404 | k141_156404_4 | 8493 | 9989 | + | SusD_RagB | SusD-like_3 |
| NULL(UNKNOWN) | k141_156404 | k141_156404_5 | 10048 | 11535 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | k141_156404 | k141_156404_6 | 11666 | 12550 | + | GH16_3 |
| CAZyme | k141_156404 | k141_156404_7 | 12582 | 14828 | + | GH3 |
| CAZyme | k141_156404 | k141_156404_8 | 14838 | 16079 | + | GH5_46 |
| TC | k141_156404 | k141_156404_9 | 16495 | 17193 | + | 3.A.1.122.2 |
| TC | k141_156404 | k141_156404_10 | 17209 | 18462 | + | 3.A.1.122.2 |
| TC | k141_156404 | k141_156404_11 | 18519 | 19751 | + | 3.A.1.122.2 |
Gene ID: k141_156404_1
Type: CAZyme
Location: 286 - 1725 (+)
Type: CAZyme
Location: 286 - 1725 (+)
Gene ID: k141_156404_2
Type: TF
Location: 2226 - 5012 (-)
Type: TF
Location: 2226 - 5012 (-)
Gene ID: k141_156404_3
Type: TC
Location: 5296 - 8424 (+)
Type: TC
Location: 5296 - 8424 (+)
Gene ID: k141_156404_4
Type: pfam
Location: 8493 - 9989 (+)
Type: pfam
Location: 8493 - 9989 (+)
Gene ID: k141_156404_5
Type:
Location: 10048 - 11535 (+)
Type:
Location: 10048 - 11535 (+)
Gene ID: k141_156404_6
Type: CAZyme
Location: 11666 - 12550 (+)
Type: CAZyme
Location: 11666 - 12550 (+)
Gene ID: k141_156404_7
Type: CAZyme
Location: 12582 - 14828 (+)
Type: CAZyme
Location: 12582 - 14828 (+)
Gene ID: k141_156404_8
Type: CAZyme
Location: 14838 - 16079 (+)
Type: CAZyme
Location: 14838 - 16079 (+)
Gene ID: k141_156404_9
Type: TC
Location: 16495 - 17193 (+)
Type: TC
Location: 16495 - 17193 (+)
Gene ID: k141_156404_10
Type: TC
Location: 17209 - 18462 (+)
Type: TC
Location: 17209 - 18462 (+)
Gene ID: k141_156404_11
Type: TC
Location: 18519 - 19751 (+)
Type: TC
Location: 18519 - 19751 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
WRDF01
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.