Cluster: CGMR085333_CGC12
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 5
- Substrate:
- Genome ID: CGMR085333
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_344141 | k141_344141_6 | 6600 | 7862 | - | 9.B.171.1.2 |
| STP | k141_344141 | k141_344141_7 | 8041 | 9105 | - | FecR |
| TF | k141_344141 | k141_344141_8 | 9251 | 9814 | - | HTH_5 |
| CAZyme | k141_344141 | k141_344141_9 | 10279 | 12243 | - | GH16_3 | GH43_24 |
| pfam | k141_344141 | k141_344141_10 | 12379 | 14415 | - | SusD_RagB | SusD-like_3 |
| TC | k141_344141 | k141_344141_11 | 14442 | 17708 | - | 1.B.14.6.1 |
| TF | k141_344141 | k141_344141_12 | 18204 | 22310 | + | HTH_AraC | HTH_AraC |
| CAZyme | k141_344141 | k141_344141_13 | 22441 | 25566 | - | GH2 |
| CAZyme | k141_344141 | k141_344141_14 | 25749 | 28166 | - | GH2 |
| TC | k141_344141 | k141_344141_15 | 29255 | 30436 | + | 2.A.1.7.17 |
| pfam | k141_344141 | k141_344141_16 | 30745 | 31395 | - | DUF1349 |
| CAZyme | k141_344141 | k141_344141_17 | 31611 | 33947 | - | GH92 |
| pfam | k141_344141 | k141_344141_18 | 33962 | 34756 | - | BSP |
| CAZyme | k141_344141 | k141_344141_19 | 34761 | 36845 | - | GH92 |
Gene ID: k141_344141_6
Type: TC
Location: 6600 - 7862 (-)
Type: TC
Location: 6600 - 7862 (-)
Gene ID: k141_344141_7
Type: STP
Location: 8041 - 9105 (-)
Type: STP
Location: 8041 - 9105 (-)
Gene ID: k141_344141_8
Type: TF
Location: 9251 - 9814 (-)
Type: TF
Location: 9251 - 9814 (-)
Gene ID: k141_344141_9
Type: CAZyme
Location: 10279 - 12243 (-)
Type: CAZyme
Location: 10279 - 12243 (-)
Gene ID: k141_344141_10
Type: pfam
Location: 12379 - 14415 (-)
Type: pfam
Location: 12379 - 14415 (-)
Gene ID: k141_344141_11
Type: TC
Location: 14442 - 17708 (-)
Type: TC
Location: 14442 - 17708 (-)
Gene ID: k141_344141_12
Type: TF
Location: 18204 - 22310 (+)
Type: TF
Location: 18204 - 22310 (+)
Gene ID: k141_344141_13
Type: CAZyme
Location: 22441 - 25566 (-)
Type: CAZyme
Location: 22441 - 25566 (-)
Gene ID: k141_344141_14
Type: CAZyme
Location: 25749 - 28166 (-)
Type: CAZyme
Location: 25749 - 28166 (-)
Gene ID: k141_344141_15
Type: TC
Location: 29255 - 30436 (+)
Type: TC
Location: 29255 - 30436 (+)
Gene ID: k141_344141_16
Type: pfam
Location: 30745 - 31395 (-)
Type: pfam
Location: 30745 - 31395 (-)
Gene ID: k141_344141_17
Type: CAZyme
Location: 31611 - 33947 (-)
Type: CAZyme
Location: 31611 - 33947 (-)
Gene ID: k141_344141_18
Type: pfam
Location: 33962 - 34756 (-)
Type: pfam
Location: 33962 - 34756 (-)
Gene ID: k141_344141_19
Type: CAZyme
Location: 34761 - 36845 (-)
Type: CAZyme
Location: 34761 - 36845 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
WRDF01
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.