Cluster: CGMR082803_CGC8
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR082803
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_51553 | k141_51553_12 | 10062 | 10376 | + | 4.A.3.2.3 |
| TF | k141_51553 | k141_51553_13 | 10462 | 11313 | - | HTH_AraC |
| CAZyme | k141_51553 | k141_51553_14 | 11379 | 13496 | - | GH31_3 |
| TC | k141_51553 | k141_51553_15 | 13539 | 14957 | - | 2.A.2.3.3 |
| TF | k141_51553 | k141_51553_16 | 15201 | 16031 | - | HTH_AraC |
| peptidase | k141_51553 | k141_51553_17 | 16154 | 18694 | - | M01.002 |
| TC | k141_51553 | k141_51553_18 | 18861 | 20246 | - | 2.A.3.1.10 |
| pfam | k141_51553 | k141_51553_19 | 20354 | 21310 | + | S-methyl_trans |
| TC | k141_51553 | k141_51553_20 | 21548 | 22207 | + | 3.A.1.3.14 |
| TC | k141_51553 | k141_51553_21 | 22250 | 24331 | - | 3.A.9.1.2 |
| pfam | k141_51553 | k141_51553_22 | 24480 | 25676 | - | Lactamase_B | Lactamase_B_2 | Lactamase_B_3 |
| STP | k141_51553 | k141_51553_23 | 25678 | 26958 | - | SBP_bac_1 |
| TC | k141_51553 | k141_51553_24 | 27111 | 27926 | - | 3.A.1.1.20 |
| TC | k141_51553 | k141_51553_25 | 27936 | 28832 | - | 3.A.1.1.4 |
| TC | k141_51553 | k141_51553_26 | 28829 | 29851 | - | 3.A.1.1.38 |
Gene ID: k141_51553_12
Type: TC
Location: 10062 - 10376 (+)
Type: TC
Location: 10062 - 10376 (+)
Gene ID: k141_51553_13
Type: TF
Location: 10462 - 11313 (-)
Type: TF
Location: 10462 - 11313 (-)
Gene ID: k141_51553_14
Type: CAZyme
Location: 11379 - 13496 (-)
Type: CAZyme
Location: 11379 - 13496 (-)
Gene ID: k141_51553_15
Type: TC
Location: 13539 - 14957 (-)
Type: TC
Location: 13539 - 14957 (-)
Gene ID: k141_51553_16
Type: TF
Location: 15201 - 16031 (-)
Type: TF
Location: 15201 - 16031 (-)
Gene ID: k141_51553_17
Type: peptidase
Location: 16154 - 18694 (-)
Type: peptidase
Location: 16154 - 18694 (-)
Gene ID: k141_51553_18
Type: TC
Location: 18861 - 20246 (-)
Type: TC
Location: 18861 - 20246 (-)
Gene ID: k141_51553_19
Type: pfam
Location: 20354 - 21310 (+)
Type: pfam
Location: 20354 - 21310 (+)
Gene ID: k141_51553_20
Type: TC
Location: 21548 - 22207 (+)
Type: TC
Location: 21548 - 22207 (+)
Gene ID: k141_51553_21
Type: TC
Location: 22250 - 24331 (-)
Type: TC
Location: 22250 - 24331 (-)
Gene ID: k141_51553_22
Type: pfam
Location: 24480 - 25676 (-)
Type: pfam
Location: 24480 - 25676 (-)
Gene ID: k141_51553_23
Type: STP
Location: 25678 - 26958 (-)
Type: STP
Location: 25678 - 26958 (-)
Gene ID: k141_51553_24
Type: TC
Location: 27111 - 27926 (-)
Type: TC
Location: 27111 - 27926 (-)
Gene ID: k141_51553_25
Type: TC
Location: 27936 - 28832 (-)
Type: TC
Location: 27936 - 28832 (-)
Gene ID: k141_51553_26
Type: TC
Location: 28829 - 29851 (-)
Type: TC
Location: 28829 - 29851 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Weissella
Species
Weissella cibaria
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.