Cluster: CGMR082803_CGC29
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 5
- Substrate:
- Genome ID: CGMR082803
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_4449 | k141_4449_39 | 42550 | 43470 | - | 8.A.5.1.4 |
| pfam | k141_4449 | k141_4449_40 | 44000 | 44461 | + | LysM |
| NULL(UNKNOWN) | k141_4449 | k141_4449_41 | 44663 | 44995 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | k141_4449 | k141_4449_42 | 45308 | 46690 | + | 2.A.1.3.30 |
| TC | k141_4449 | k141_4449_43 | 46889 | 48223 | + | 4.A.3.2.2 |
| CAZyme | k141_4449 | k141_4449_44 | 48226 | 49323 | + | GH170 |
| STP | k141_4449 | k141_4449_45 | 49504 | 50148 | + | CBS |
| STP | k141_4449 | k141_4449_46 | 50225 | 50827 | - | TetR_N |
| TC | k141_4449 | k141_4449_47 | 50985 | 53888 | + | 9.B.74.1.3 |
| NULL(UNKNOWN) | k141_4449 | k141_4449_48 | 54078 | 54251 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | k141_4449 | k141_4449_49 | 54513 | 56405 | + | GH13_9 |
| pfam | k141_4449 | k141_4449_50 | 56398 | 57561 | + | NTP_transferase | NTP_transf_3 | Hexapep_GlmU |
| pfam | k141_4449 | k141_4449_51 | 57554 | 58678 | + | NTP_transferase | Hexapep_GlmU |
| CAZyme | k141_4449 | k141_4449_52 | 58678 | 60108 | + | GT5 |
| CAZyme | k141_4449 | k141_4449_53 | 60127 | 62538 | + | GT35 |
| CAZyme | k141_4449 | k141_4449_54 | 62551 | 64230 | + | GH13_39 |
Gene ID: k141_4449_39
Type: TC
Location: 42550 - 43470 (-)
Type: TC
Location: 42550 - 43470 (-)
Gene ID: k141_4449_40
Type: pfam
Location: 44000 - 44461 (+)
Type: pfam
Location: 44000 - 44461 (+)
Gene ID: k141_4449_41
Type:
Location: 44663 - 44995 (-)
Type:
Location: 44663 - 44995 (-)
Gene ID: k141_4449_42
Type: TC
Location: 45308 - 46690 (+)
Type: TC
Location: 45308 - 46690 (+)
Gene ID: k141_4449_43
Type: TC
Location: 46889 - 48223 (+)
Type: TC
Location: 46889 - 48223 (+)
Gene ID: k141_4449_44
Type: CAZyme
Location: 48226 - 49323 (+)
Type: CAZyme
Location: 48226 - 49323 (+)
Gene ID: k141_4449_45
Type: STP
Location: 49504 - 50148 (+)
Type: STP
Location: 49504 - 50148 (+)
Gene ID: k141_4449_46
Type: STP
Location: 50225 - 50827 (-)
Type: STP
Location: 50225 - 50827 (-)
Gene ID: k141_4449_47
Type: TC
Location: 50985 - 53888 (+)
Type: TC
Location: 50985 - 53888 (+)
Gene ID: k141_4449_48
Type:
Location: 54078 - 54251 (+)
Type:
Location: 54078 - 54251 (+)
Gene ID: k141_4449_49
Type: CAZyme
Location: 54513 - 56405 (+)
Type: CAZyme
Location: 54513 - 56405 (+)
Gene ID: k141_4449_50
Type: pfam
Location: 56398 - 57561 (+)
Type: pfam
Location: 56398 - 57561 (+)
Gene ID: k141_4449_51
Type: pfam
Location: 57554 - 58678 (+)
Type: pfam
Location: 57554 - 58678 (+)
Gene ID: k141_4449_52
Type: CAZyme
Location: 58678 - 60108 (+)
Type: CAZyme
Location: 58678 - 60108 (+)
Gene ID: k141_4449_53
Type: CAZyme
Location: 60127 - 62538 (+)
Type: CAZyme
Location: 60127 - 62538 (+)
Gene ID: k141_4449_54
Type: CAZyme
Location: 62551 - 64230 (+)
Type: CAZyme
Location: 62551 - 64230 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Weissella
Species
Weissella cibaria
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.