Cluster: CGMR076566_CGC8
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 6
- Substrate:
- Genome ID: CGMR076566
- CGC Family ID: CGCFAM_08972
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_345056 | k141_345056_5 | 3902 | 6859 | - | GH106 |
| CAZyme | k141_345056 | k141_345056_6 | 7198 | 9105 | + | CBM32 | GH43_28 |
| pfam | k141_345056 | k141_345056_7 | 9368 | 10675 | + | Lipocalin | Epimerase | Lipocalin_2 | DUF1731 |
| pfam | k141_345056 | k141_345056_8 | 10743 | 11636 | - | S1_2 | S1_2 | CvfB_WH |
| CAZyme | k141_345056 | k141_345056_9 | 11766 | 12704 | + | GH23 |
| pfam | k141_345056 | k141_345056_10 | 12728 | 15574 | + | UvrA_DNA-bind | UvrA_inter |
| sulfatase | k141_345056 | k141_345056_11 | 15937 | 16749 | - | S1_2 |
| CAZyme | k141_345056 | k141_345056_12 | 16874 | 18982 | - | GH141 |
| STP | k141_345056 | k141_345056_13 | 19019 | 21133 | - | B12-binding |
| pfam | k141_345056 | k141_345056_14 | 21139 | 21915 | - | Lactamase_B | Lactamase_B_2 |
| TC | k141_345056 | k141_345056_15 | 21970 | 23493 | - | 2.A.17.1.7 |
| CAZyme | k141_345056 | k141_345056_16 | 23604 | 25655 | + | GH13_8 |
| CAZyme | k141_345056 | k141_345056_17 | 25820 | 27043 | + | GH5_57 |
Gene ID: k141_345056_5
Type: CAZyme
Location: 3902 - 6859 (-)
Type: CAZyme
Location: 3902 - 6859 (-)
Gene ID: k141_345056_6
Type: CAZyme
Location: 7198 - 9105 (+)
Type: CAZyme
Location: 7198 - 9105 (+)
Gene ID: k141_345056_7
Type: pfam
Location: 9368 - 10675 (+)
Type: pfam
Location: 9368 - 10675 (+)
Gene ID: k141_345056_8
Type: pfam
Location: 10743 - 11636 (-)
Type: pfam
Location: 10743 - 11636 (-)
Gene ID: k141_345056_9
Type: CAZyme
Location: 11766 - 12704 (+)
Type: CAZyme
Location: 11766 - 12704 (+)
Gene ID: k141_345056_10
Type: pfam
Location: 12728 - 15574 (+)
Type: pfam
Location: 12728 - 15574 (+)
Gene ID: k141_345056_11
Type: sulfatase
Location: 15937 - 16749 (-)
Type: sulfatase
Location: 15937 - 16749 (-)
Gene ID: k141_345056_12
Type: CAZyme
Location: 16874 - 18982 (-)
Type: CAZyme
Location: 16874 - 18982 (-)
Gene ID: k141_345056_13
Type: STP
Location: 19019 - 21133 (-)
Type: STP
Location: 19019 - 21133 (-)
Gene ID: k141_345056_14
Type: pfam
Location: 21139 - 21915 (-)
Type: pfam
Location: 21139 - 21915 (-)
Gene ID: k141_345056_15
Type: TC
Location: 21970 - 23493 (-)
Type: TC
Location: 21970 - 23493 (-)
Gene ID: k141_345056_16
Type: CAZyme
Location: 23604 - 25655 (+)
Type: CAZyme
Location: 23604 - 25655 (+)
Gene ID: k141_345056_17
Type: CAZyme
Location: 25820 - 27043 (+)
Type: CAZyme
Location: 25820 - 27043 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Species
Alistipes_A merdigallinarum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.