Cluster: CGMR073893_CGC2
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 3
- Substrate: alpha-glucan
- Genome ID: CGMR073893
- CGC Family ID: CGCFAM_00336
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_10429 | k141_10429_39 | 43626 | 44732 | - | 3.A.1.1.20 |
| NULL(UNKNOWN) | k141_10429 | k141_10429_40 | 44783 | 45589 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | k141_10429 | k141_10429_41 | 45627 | 46493 | - | 3.A.1.1.26 |
| TC | k141_10429 | k141_10429_42 | 46499 | 47782 | - | 3.A.1.1.26 |
| TC | k141_10429 | k141_10429_43 | 48081 | 49337 | - | 3.A.1.1.26 |
| CAZyme | k141_10429 | k141_10429_44 | 49447 | 51222 | - | CBM34 | GH13_20 |
| CAZyme | k141_10429 | k141_10429_45 | 51529 | 53208 | - | GH13_31 |
| TF | k141_10429 | k141_10429_46 | 53373 | 54320 | - | LacI |
| pfam | k141_10429 | k141_10429_47 | 54516 | 55187 | - | Hydrolase | HAD_2 |
| CAZyme | k141_10429 | k141_10429_48 | 55190 | 57454 | - | GH65 |
| TC | k141_10429 | k141_10429_49 | 57732 | 59138 | - | 2.A.35.1.3 |
Gene ID: k141_10429_39
Type: TC
Location: 43626 - 44732 (-)
Type: TC
Location: 43626 - 44732 (-)
Gene ID: k141_10429_40
Type:
Location: 44783 - 45589 (-)
Type:
Location: 44783 - 45589 (-)
Gene ID: k141_10429_41
Type: TC
Location: 45627 - 46493 (-)
Type: TC
Location: 45627 - 46493 (-)
Gene ID: k141_10429_42
Type: TC
Location: 46499 - 47782 (-)
Type: TC
Location: 46499 - 47782 (-)
Gene ID: k141_10429_43
Type: TC
Location: 48081 - 49337 (-)
Type: TC
Location: 48081 - 49337 (-)
Gene ID: k141_10429_44
Type: CAZyme
Location: 49447 - 51222 (-)
Type: CAZyme
Location: 49447 - 51222 (-)
Gene ID: k141_10429_45
Type: CAZyme
Location: 51529 - 53208 (-)
Type: CAZyme
Location: 51529 - 53208 (-)
Gene ID: k141_10429_46
Type: TF
Location: 53373 - 54320 (-)
Type: TF
Location: 53373 - 54320 (-)
Gene ID: k141_10429_47
Type: pfam
Location: 54516 - 55187 (-)
Type: pfam
Location: 54516 - 55187 (-)
Gene ID: k141_10429_48
Type: CAZyme
Location: 55190 - 57454 (-)
Type: CAZyme
Location: 55190 - 57454 (-)
Gene ID: k141_10429_49
Type: TC
Location: 57732 - 59138 (-)
Type: TC
Location: 57732 - 59138 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Ligilactobacillus
Species
Ligilactobacillus acidipiscis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.