Cluster: CGMR073586_CGC60
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 8
- Substrate:
- Genome ID: CGMR073586
- CGC Family ID: CGCFAM_04479
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_88088 | k141_88088_12 | 11964 | 13193 | + | GT2 |
| CAZyme | k141_88088 | k141_88088_13 | 13210 | 14334 | + | GT4 |
| CAZyme | k141_88088 | k141_88088_14 | 14342 | 15547 | + | GT4 |
| STP | k141_88088 | k141_88088_15 | 15544 | 16485 | + | Pribosyltran |
| pfam | k141_88088 | k141_88088_16 | 16495 | 17514 | + | Acyl_transf_3 |
| CAZyme | k141_88088 | k141_88088_17 | 18023 | 18844 | - | GT2 |
| NULL(UNKNOWN) | k141_88088 | k141_88088_18 | 18844 | 20403 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | k141_88088 | k141_88088_19 | 20410 | 21423 | - | GT2 |
| CAZyme | k141_88088 | k141_88088_20 | 21483 | 22526 | - | GT2 |
| pfam | k141_88088 | k141_88088_21 | 22542 | 24335 | - | Asn_synthase |
| CAZyme | k141_88088 | k141_88088_22 | 24349 | 25512 | - | GT2 |
| pfam | k141_88088 | k141_88088_23 | 25523 | 26461 | - | 3Beta_HSD | Epimerase | RmlD_sub_bind | GDP_Man_Dehyd |
| CAZyme | k141_88088 | k141_88088_24 | 26650 | 27843 | + | GT2 |
| pfam | k141_88088 | k141_88088_25 | 27948 | 29063 | - | Usp |
| NULL(UNKNOWN) | k141_88088 | k141_88088_26 | 29179 | 29454 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | k141_88088 | k141_88088_27 | 29570 | 30262 | - | 9.B.105.1.7 |
Gene ID: k141_88088_12
Type: CAZyme
Location: 11964 - 13193 (+)
Type: CAZyme
Location: 11964 - 13193 (+)
Gene ID: k141_88088_13
Type: CAZyme
Location: 13210 - 14334 (+)
Type: CAZyme
Location: 13210 - 14334 (+)
Gene ID: k141_88088_14
Type: CAZyme
Location: 14342 - 15547 (+)
Type: CAZyme
Location: 14342 - 15547 (+)
Gene ID: k141_88088_15
Type: STP
Location: 15544 - 16485 (+)
Type: STP
Location: 15544 - 16485 (+)
Gene ID: k141_88088_16
Type: pfam
Location: 16495 - 17514 (+)
Type: pfam
Location: 16495 - 17514 (+)
Gene ID: k141_88088_17
Type: CAZyme
Location: 18023 - 18844 (-)
Type: CAZyme
Location: 18023 - 18844 (-)
Gene ID: k141_88088_18
Type:
Location: 18844 - 20403 (-)
Type:
Location: 18844 - 20403 (-)
Gene ID: k141_88088_19
Type: CAZyme
Location: 20410 - 21423 (-)
Type: CAZyme
Location: 20410 - 21423 (-)
Gene ID: k141_88088_20
Type: CAZyme
Location: 21483 - 22526 (-)
Type: CAZyme
Location: 21483 - 22526 (-)
Gene ID: k141_88088_21
Type: pfam
Location: 22542 - 24335 (-)
Type: pfam
Location: 22542 - 24335 (-)
Gene ID: k141_88088_22
Type: CAZyme
Location: 24349 - 25512 (-)
Type: CAZyme
Location: 24349 - 25512 (-)
Gene ID: k141_88088_23
Type: pfam
Location: 25523 - 26461 (-)
Type: pfam
Location: 25523 - 26461 (-)
Gene ID: k141_88088_24
Type: CAZyme
Location: 26650 - 27843 (+)
Type: CAZyme
Location: 26650 - 27843 (+)
Gene ID: k141_88088_25
Type: pfam
Location: 27948 - 29063 (-)
Type: pfam
Location: 27948 - 29063 (-)
Gene ID: k141_88088_26
Type:
Location: 29179 - 29454 (-)
Type:
Location: 29179 - 29454 (-)
Gene ID: k141_88088_27
Type: TC
Location: 29570 - 30262 (-)
Type: TC
Location: 29570 - 30262 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Tannerellaceae
Genus
Parabacteroides
Species
Parabacteroides johnsonii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.