Cluster: CGMR073586_CGC50
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate:
- Genome ID: CGMR073586
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_95428 | k141_95428_2 | 4952 | 8098 | + | 1.B.14.6.1 |
| pfam | k141_95428 | k141_95428_3 | 8111 | 9850 | + | SusD_RagB | SusD-like | SusD-like_2 | SusD-like_3 |
| CAZyme | k141_95428 | k141_95428_4 | 10193 | 12013 | + | PL35 |
| CAZyme | k141_95428 | k141_95428_5 | 12049 | 13266 | + | GH88 |
Gene ID: k141_95428_2
Type: TC
Location: 4952 - 8098 (+)
Type: TC
Location: 4952 - 8098 (+)
Gene ID: k141_95428_3
Type: pfam
Location: 8111 - 9850 (+)
Type: pfam
Location: 8111 - 9850 (+)
Gene ID: k141_95428_4
Type: CAZyme
Location: 10193 - 12013 (+)
Type: CAZyme
Location: 10193 - 12013 (+)
Gene ID: k141_95428_5
Type: CAZyme
Location: 12049 - 13266 (+)
Type: CAZyme
Location: 12049 - 13266 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Tannerellaceae
Genus
Parabacteroides
Species
Parabacteroides johnsonii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_95428_2 | vegetarian > omnivore | 1.35240 | 0.00085 |
| k141_95428_3 | vegetarian > omnivore | 2.04805 | 0.00085 |
| k141_95428_4 | vegan > omnivore | 1.20616 | 0.03783 |
| k141_95428_4 | vegetarian > omnivore | 1.65094 | 0.00085 |