Cluster: CGMR073586_CGC31
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: CGMR073586
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_87356 | k141_87356_7 | 6237 | 9227 | + | 1.B.14.6.1 |
| pfam | k141_87356 | k141_87356_8 | 9252 | 10712 | + | SusD_RagB | SusD-like_3 |
| pfam | k141_87356 | k141_87356_9 | 10766 | 11995 | + | Sugar_tr | MFS_1 |
| CAZyme | k141_87356 | k141_87356_10 | 12021 | 13322 | + | GH10 |
| CAZyme | k141_87356 | k141_87356_11 | 13341 | 14891 | + | GH10 |
Gene ID: k141_87356_7
Type: TC
Location: 6237 - 9227 (+)
Type: TC
Location: 6237 - 9227 (+)
Gene ID: k141_87356_8
Type: pfam
Location: 9252 - 10712 (+)
Type: pfam
Location: 9252 - 10712 (+)
Gene ID: k141_87356_9
Type: pfam
Location: 10766 - 11995 (+)
Type: pfam
Location: 10766 - 11995 (+)
Gene ID: k141_87356_10
Type: CAZyme
Location: 12021 - 13322 (+)
Type: CAZyme
Location: 12021 - 13322 (+)
Gene ID: k141_87356_11
Type: CAZyme
Location: 13341 - 14891 (+)
Type: CAZyme
Location: 13341 - 14891 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Tannerellaceae
Genus
Parabacteroides
Species
Parabacteroides johnsonii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_87356_7 | vegetarian > omnivore | 2.93624 | 0.00085 |
| k141_87356_8 | vegetarian > omnivore | 3.64093 | 0.00085 |
| k141_87356_9 | vegetarian > omnivore | 2.73999 | 0.00085 |
| k141_87356_10 | vegetarian > omnivore | 2.62835 | 0.00085 |
| k141_87356_11 | vegetarian > omnivore | 3.13268 | 0.00085 |