Cluster: CGMR065917_CGC6
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 5
- Substrate:
- Genome ID: CGMR065917
- CGC Family ID: CGCFAM_08877
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_53085 | k141_53085_151 | 167636 | 169093 | - | 4.A.2.1.25 |
| TC | k141_53085 | k141_53085_152 | 169112 | 169555 | - | 4.A.2.1.14 |
| TC | k141_53085 | k141_53085_153 | 169932 | 170414 | - | 4.A.1.1.11 |
| TF | k141_53085 | k141_53085_154 | 170427 | 171275 | - | HTH_6 |
| TC | k141_53085 | k141_53085_155 | 171313 | 172809 | - | 4.A.1.2.7 |
| STP | k141_53085 | k141_53085_156 | 172824 | 173714 | - | SIS |
| CAZyme | k141_53085 | k141_53085_157 | 173711 | 174766 | - | GH170 |
| CAZyme | k141_53085 | k141_53085_158 | 174951 | 176393 | - | GH1 |
| CAZyme | k141_53085 | k141_53085_159 | 176482 | 177945 | - | GH1 |
| TC | k141_53085 | k141_53085_160 | 177965 | 179962 | - | 4.A.1.2.6 |
| pfam | k141_53085 | k141_53085_161 | 180205 | 180984 | - | PRD | PRD | CAT_RBD |
| CAZyme | k141_53085 | k141_53085_162 | 181203 | 183407 | - | GH65 |
| TF | k141_53085 | k141_53085_163 | 183655 | 184632 | - | LacI |
| TC | k141_53085 | k141_53085_164 | 184802 | 186223 | + | 2.A.2.4.4 |
| CAZyme | k141_53085 | k141_53085_165 | 186254 | 188554 | + | GH31_1 |
Gene ID: k141_53085_151
Type: TC
Location: 167636 - 169093 (-)
Type: TC
Location: 167636 - 169093 (-)
Gene ID: k141_53085_152
Type: TC
Location: 169112 - 169555 (-)
Type: TC
Location: 169112 - 169555 (-)
Gene ID: k141_53085_153
Type: TC
Location: 169932 - 170414 (-)
Type: TC
Location: 169932 - 170414 (-)
Gene ID: k141_53085_154
Type: TF
Location: 170427 - 171275 (-)
Type: TF
Location: 170427 - 171275 (-)
Gene ID: k141_53085_155
Type: TC
Location: 171313 - 172809 (-)
Type: TC
Location: 171313 - 172809 (-)
Gene ID: k141_53085_156
Type: STP
Location: 172824 - 173714 (-)
Type: STP
Location: 172824 - 173714 (-)
Gene ID: k141_53085_157
Type: CAZyme
Location: 173711 - 174766 (-)
Type: CAZyme
Location: 173711 - 174766 (-)
Gene ID: k141_53085_158
Type: CAZyme
Location: 174951 - 176393 (-)
Type: CAZyme
Location: 174951 - 176393 (-)
Gene ID: k141_53085_159
Type: CAZyme
Location: 176482 - 177945 (-)
Type: CAZyme
Location: 176482 - 177945 (-)
Gene ID: k141_53085_160
Type: TC
Location: 177965 - 179962 (-)
Type: TC
Location: 177965 - 179962 (-)
Gene ID: k141_53085_161
Type: pfam
Location: 180205 - 180984 (-)
Type: pfam
Location: 180205 - 180984 (-)
Gene ID: k141_53085_162
Type: CAZyme
Location: 181203 - 183407 (-)
Type: CAZyme
Location: 181203 - 183407 (-)
Gene ID: k141_53085_163
Type: TF
Location: 183655 - 184632 (-)
Type: TF
Location: 183655 - 184632 (-)
Gene ID: k141_53085_164
Type: TC
Location: 184802 - 186223 (+)
Type: TC
Location: 184802 - 186223 (+)
Gene ID: k141_53085_165
Type: CAZyme
Location: 186254 - 188554 (+)
Type: CAZyme
Location: 186254 - 188554 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Lactiplantibacillus
Species
Lactiplantibacillus plantarum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.