Cluster: CGMR065917_CGC5
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 3
- Substrate:
- Genome ID: CGMR065917
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_53085 | k141_53085_135 | 148643 | 149875 | - | 2.A.1.15.12 |
| pfam | k141_53085 | k141_53085_136 | 149888 | 150778 | - | Shikimate_dh_N | SDH_C |
| TF | k141_53085 | k141_53085_137 | 150974 | 151852 | + | HTH_1 |
| TC | k141_53085 | k141_53085_138 | 151933 | 153138 | - | 2.A.1.15.12 |
| NULL(UNKNOWN) | k141_53085 | k141_53085_139 | 153276 | 153647 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | k141_53085 | k141_53085_140 | 153640 | 154431 | - | CE1 |
| TF | k141_53085 | k141_53085_141 | 154461 | 155192 | - | GntR |
| TC | k141_53085 | k141_53085_142 | 155414 | 156751 | + | 4.A.3.2.2 |
| STP | k141_53085 | k141_53085_143 | 156908 | 157858 | + | SIS |
| pfam | k141_53085 | k141_53085_144 | 157870 | 158778 | + | BcrAD_BadFG |
| CAZyme | k141_53085 | k141_53085_145 | 158775 | 159863 | + | GH170 |
| CAZyme | k141_53085 | k141_53085_146 | 160085 | 161545 | - | GH1 |
| TC | k141_53085 | k141_53085_147 | 161538 | 163412 | - | 4.A.1.2.2 |
Gene ID: k141_53085_135
Type: TC
Location: 148643 - 149875 (-)
Type: TC
Location: 148643 - 149875 (-)
Gene ID: k141_53085_136
Type: pfam
Location: 149888 - 150778 (-)
Type: pfam
Location: 149888 - 150778 (-)
Gene ID: k141_53085_137
Type: TF
Location: 150974 - 151852 (+)
Type: TF
Location: 150974 - 151852 (+)
Gene ID: k141_53085_138
Type: TC
Location: 151933 - 153138 (-)
Type: TC
Location: 151933 - 153138 (-)
Gene ID: k141_53085_139
Type:
Location: 153276 - 153647 (-)
Type:
Location: 153276 - 153647 (-)
Gene ID: k141_53085_140
Type: CAZyme
Location: 153640 - 154431 (-)
Type: CAZyme
Location: 153640 - 154431 (-)
Gene ID: k141_53085_141
Type: TF
Location: 154461 - 155192 (-)
Type: TF
Location: 154461 - 155192 (-)
Gene ID: k141_53085_142
Type: TC
Location: 155414 - 156751 (+)
Type: TC
Location: 155414 - 156751 (+)
Gene ID: k141_53085_143
Type: STP
Location: 156908 - 157858 (+)
Type: STP
Location: 156908 - 157858 (+)
Gene ID: k141_53085_144
Type: pfam
Location: 157870 - 158778 (+)
Type: pfam
Location: 157870 - 158778 (+)
Gene ID: k141_53085_145
Type: CAZyme
Location: 158775 - 159863 (+)
Type: CAZyme
Location: 158775 - 159863 (+)
Gene ID: k141_53085_146
Type: CAZyme
Location: 160085 - 161545 (-)
Type: CAZyme
Location: 160085 - 161545 (-)
Gene ID: k141_53085_147
Type: TC
Location: 161538 - 163412 (-)
Type: TC
Location: 161538 - 163412 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Lactiplantibacillus
Species
Lactiplantibacillus plantarum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.