Cluster: CGMR065917_CGC33
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 3
- Substrate:
- Genome ID: CGMR065917
- CGC Family ID: CGCFAM_08875
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_37458 | k141_37458_28 | 29236 | 30711 | + | 3.A.1.3.20 |
| TC | k141_37458 | k141_37458_29 | 30704 | 31444 | + | 3.A.1.3.25 |
| pfam | k141_37458 | k141_37458_30 | 31627 | 33441 | + | GIY-YIG | UVR | UvrC_RNaseH_dom | HHH_5 | UvrC_RNaseH |
| pfam | k141_37458 | k141_37458_31 | 33864 | 34622 | + | Wzz | GNVR |
| TC | k141_37458 | k141_37458_32 | 34640 | 35347 | + | 8.A.3.3.1 |
| pfam | k141_37458 | k141_37458_33 | 35286 | 36047 | + | CpsB_CapC |
| pfam | k141_37458 | k141_37458_34 | 36028 | 36546 | + | Epimerase | GDP_Man_Dehyd |
| TC | k141_37458 | k141_37458_35 | 36533 | 37198 | + | 9.B.18.1.3 |
| CAZyme | k141_37458 | k141_37458_36 | 37198 | 38289 | + | GT4 |
| CAZyme | k141_37458 | k141_37458_37 | 38305 | 39333 | + | GT4 |
| NULL(UNKNOWN) | k141_37458 | k141_37458_38 | 39330 | 40604 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | k141_37458 | k141_37458_39 | 40589 | 41557 | + | GT2 |
| pfam | k141_37458 | k141_37458_40 | 41637 | 43052 | + | MatE | Polysacc_synt |
| pfam | k141_37458 | k141_37458_41 | 43160 | 44482 | - | Metallophos |
| TC | k141_37458 | k141_37458_42 | 44622 | 46589 | - | 4.A.2.1.7 |
Gene ID: k141_37458_28
Type: TC
Location: 29236 - 30711 (+)
Type: TC
Location: 29236 - 30711 (+)
Gene ID: k141_37458_29
Type: TC
Location: 30704 - 31444 (+)
Type: TC
Location: 30704 - 31444 (+)
Gene ID: k141_37458_30
Type: pfam
Location: 31627 - 33441 (+)
Type: pfam
Location: 31627 - 33441 (+)
Gene ID: k141_37458_31
Type: pfam
Location: 33864 - 34622 (+)
Type: pfam
Location: 33864 - 34622 (+)
Gene ID: k141_37458_32
Type: TC
Location: 34640 - 35347 (+)
Type: TC
Location: 34640 - 35347 (+)
Gene ID: k141_37458_33
Type: pfam
Location: 35286 - 36047 (+)
Type: pfam
Location: 35286 - 36047 (+)
Gene ID: k141_37458_34
Type: pfam
Location: 36028 - 36546 (+)
Type: pfam
Location: 36028 - 36546 (+)
Gene ID: k141_37458_35
Type: TC
Location: 36533 - 37198 (+)
Type: TC
Location: 36533 - 37198 (+)
Gene ID: k141_37458_36
Type: CAZyme
Location: 37198 - 38289 (+)
Type: CAZyme
Location: 37198 - 38289 (+)
Gene ID: k141_37458_37
Type: CAZyme
Location: 38305 - 39333 (+)
Type: CAZyme
Location: 38305 - 39333 (+)
Gene ID: k141_37458_38
Type:
Location: 39330 - 40604 (+)
Type:
Location: 39330 - 40604 (+)
Gene ID: k141_37458_39
Type: CAZyme
Location: 40589 - 41557 (+)
Type: CAZyme
Location: 40589 - 41557 (+)
Gene ID: k141_37458_40
Type: pfam
Location: 41637 - 43052 (+)
Type: pfam
Location: 41637 - 43052 (+)
Gene ID: k141_37458_41
Type: pfam
Location: 43160 - 44482 (-)
Type: pfam
Location: 43160 - 44482 (-)
Gene ID: k141_37458_42
Type: TC
Location: 44622 - 46589 (-)
Type: TC
Location: 44622 - 46589 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Lactiplantibacillus
Species
Lactiplantibacillus plantarum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.