Cluster: CGMR062874_CGC9
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 5
- Substrate: beta-mannan
- Genome ID: CGMR062874
- CGC Family ID: CGCFAM_00333
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_60992 | k141_60992_22 | 32786 | 34159 | - | 2.A.2.3.6 |
| CAZyme | k141_60992 | k141_60992_23 | 34189 | 35361 | - | GH130_1 |
| CAZyme | k141_60992 | k141_60992_24 | 35403 | 37610 | - | GH36 |
| CAZyme | k141_60992 | k141_60992_25 | 37620 | 38720 | - | GH26 |
| CAZyme | k141_60992 | k141_60992_26 | 38738 | 39820 | - | GH26 |
| pfam | k141_60992 | k141_60992_27 | 39840 | 41015 | - | SGBP_B_XBD |
| pfam | k141_60992 | k141_60992_28 | 41066 | 42877 | - | SusD_RagB | SusD-like_3 |
| TC | k141_60992 | k141_60992_29 | 42904 | 46152 | - | 1.B.14.6.1 |
| TF | k141_60992 | k141_60992_30 | 46518 | 50414 | + | HTH_AraC | HTH_AraC |
| NULL(UNKNOWN) | k141_60992 | k141_60992_31 | 50503 | 50622 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | k141_60992 | k141_60992_32 | 51398 | 53851 | - | GH3 |
Gene ID: k141_60992_22
Type: TC
Location: 32786 - 34159 (-)
Type: TC
Location: 32786 - 34159 (-)
Gene ID: k141_60992_23
Type: CAZyme
Location: 34189 - 35361 (-)
Type: CAZyme
Location: 34189 - 35361 (-)
Gene ID: k141_60992_24
Type: CAZyme
Location: 35403 - 37610 (-)
Type: CAZyme
Location: 35403 - 37610 (-)
Gene ID: k141_60992_25
Type: CAZyme
Location: 37620 - 38720 (-)
Type: CAZyme
Location: 37620 - 38720 (-)
Gene ID: k141_60992_26
Type: CAZyme
Location: 38738 - 39820 (-)
Type: CAZyme
Location: 38738 - 39820 (-)
Gene ID: k141_60992_27
Type: pfam
Location: 39840 - 41015 (-)
Type: pfam
Location: 39840 - 41015 (-)
Gene ID: k141_60992_28
Type: pfam
Location: 41066 - 42877 (-)
Type: pfam
Location: 41066 - 42877 (-)
Gene ID: k141_60992_29
Type: TC
Location: 42904 - 46152 (-)
Type: TC
Location: 42904 - 46152 (-)
Gene ID: k141_60992_30
Type: TF
Location: 46518 - 50414 (+)
Type: TF
Location: 46518 - 50414 (+)
Gene ID: k141_60992_31
Type:
Location: 50503 - 50622 (-)
Type:
Location: 50503 - 50622 (-)
Gene ID: k141_60992_32
Type: CAZyme
Location: 51398 - 53851 (-)
Type: CAZyme
Location: 51398 - 53851 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_60992_25 | vegan > omnivore | 1.28698 | 0.00029 |
| k141_60992_26 | vegan > omnivore | 1.65900 | 0.00029 |
| k141_60992_26 | vegetarian > omnivore | 1.12699 | 0.00993 |
| k141_60992_27 | vegan > omnivore | 1.60241 | 0.00029 |
| k141_60992_28 | vegan > omnivore | 1.67923 | 0.00029 |
| k141_60992_29 | vegan > omnivore | 2.11083 | 0.00029 |
| k141_60992_29 | vegetarian > omnivore | 1.23658 | 0.00993 |
| k141_60992_30 | vegan > omnivore | 2.36661 | 0.00029 |
| k141_60992_30 | vegetarian > omnivore | 1.58281 | 0.00993 |