Cluster: CGMR062874_CGC76
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 4
- Substrate:
- Genome ID: CGMR062874
- CGC Family ID: CGCFAM_01888
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_79609 | k141_79609_44 | 54153 | 57479 | - | 1.B.14.6.1 |
| TF | k141_79609 | k141_79609_45 | 57736 | 61671 | + | HTH_AraC |
| pfam | k141_79609 | k141_79609_46 | 61710 | 62405 | - | RadC | UPF0758_N |
| CAZyme | k141_79609 | k141_79609_47 | 62548 | 64578 | + | GH20 |
| CAZyme | k141_79609 | k141_79609_48 | 64848 | 65837 | - | GT2 |
| TF | k141_79609 | k141_79609_49 | 65956 | 66549 | - | GerE |
| STP | k141_79609 | k141_79609_50 | 66708 | 67706 | + | FecR |
| TC | k141_79609 | k141_79609_51 | 67728 | 71087 | + | 1.B.14.6.1 |
| pfam | k141_79609 | k141_79609_52 | 71109 | 72926 | + | SusD_RagB | SusD-like_3 |
| CAZyme | k141_79609 | k141_79609_53 | 72950 | 74275 | + | CBM32 |
| CAZyme | k141_79609 | k141_79609_54 | 74313 | 76322 | + | GH97 |
Gene ID: k141_79609_44
Type: TC
Location: 54153 - 57479 (-)
Type: TC
Location: 54153 - 57479 (-)
Gene ID: k141_79609_45
Type: TF
Location: 57736 - 61671 (+)
Type: TF
Location: 57736 - 61671 (+)
Gene ID: k141_79609_46
Type: pfam
Location: 61710 - 62405 (-)
Type: pfam
Location: 61710 - 62405 (-)
Gene ID: k141_79609_47
Type: CAZyme
Location: 62548 - 64578 (+)
Type: CAZyme
Location: 62548 - 64578 (+)
Gene ID: k141_79609_48
Type: CAZyme
Location: 64848 - 65837 (-)
Type: CAZyme
Location: 64848 - 65837 (-)
Gene ID: k141_79609_49
Type: TF
Location: 65956 - 66549 (-)
Type: TF
Location: 65956 - 66549 (-)
Gene ID: k141_79609_50
Type: STP
Location: 66708 - 67706 (+)
Type: STP
Location: 66708 - 67706 (+)
Gene ID: k141_79609_51
Type: TC
Location: 67728 - 71087 (+)
Type: TC
Location: 67728 - 71087 (+)
Gene ID: k141_79609_52
Type: pfam
Location: 71109 - 72926 (+)
Type: pfam
Location: 71109 - 72926 (+)
Gene ID: k141_79609_53
Type: CAZyme
Location: 72950 - 74275 (+)
Type: CAZyme
Location: 72950 - 74275 (+)
Gene ID: k141_79609_54
Type: CAZyme
Location: 74313 - 76322 (+)
Type: CAZyme
Location: 74313 - 76322 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_79609_44 | vegan > omnivore | 1.75355 | 0.00029 |
| k141_79609_44 | vegetarian > omnivore | 1.61912 | 0.00993 |
| k141_79609_45 | vegan > omnivore | 1.75087 | 0.00029 |
| k141_79609_45 | vegetarian > omnivore | 1.92871 | 0.00993 |
| k141_79609_47 | vegan > omnivore | 1.15697 | 0.00029 |
| k141_79609_47 | vegetarian > omnivore | 1.43085 | 0.00993 |