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Cluster: CGMR062874_CGC60

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC k141_65583 k141_65583_1 277 3525 + 1.B.14.6.1
pfam k141_65583 k141_65583_2 3551 5458 + SusD_RagB | SusD-like_3
pfam k141_65583 k141_65583_3 5477 7351 + DUF5123
CAZyme k141_65583 k141_65583_4 7437 9068 + CE8
CAZyme k141_65583 k141_65583_5 9160 10734 + PL1_2
CAZyme k141_65583 k141_65583_6 10765 12423 + PL1_2
CAZyme k141_65583 k141_65583_7 12459 13955 + PL1_2
TF k141_65583 k141_65583_8 14040 18584 - HTH_AraC
CAZyme k141_65583 k141_65583_9 18765 20504 - CE12 | CE8
CAZyme k141_65583 k141_65583_10 20844 21788 - CE8
CAZyme k141_65583 k141_65583_11 21825 23024 - GH105
TC k141_65583 k141_65583_12 23326 24729 + 4.A.5.1.4
pfam k141_65583 k141_65583_13 24751 25674 + KduI
NULL(UNKNOWN) k141_65583 k141_65583_14 25652 25858 - NULL(UNKNOWN)
[View Structural Homologs]
TC k141_65583 k141_65583_15 25942 27459 + 2.A.1.14.25
NULL(UNKNOWN) k141_65583 k141_65583_16 27547 27678 + NULL(UNKNOWN)
[View Structural Homologs]
pfam k141_65583 k141_65583_17 27856 31239 - DEAD | ResIII | AAA_11 | AAA_11 | AAA_12 | AAA_19 | AAA_30
TC k141_65583 k141_65583_18 31214 32038 - 2.A.64.1.2
Gene ID: k141_65583_1
Type: TC
Location: 277 - 3525 (+)
Gene ID: k141_65583_2
Type: pfam
Location: 3551 - 5458 (+)
Gene ID: k141_65583_3
Type: pfam
Location: 5477 - 7351 (+)
Gene ID: k141_65583_4
Type: CAZyme
Location: 7437 - 9068 (+)
Gene ID: k141_65583_5
Type: CAZyme
Location: 9160 - 10734 (+)
Gene ID: k141_65583_6
Type: CAZyme
Location: 10765 - 12423 (+)
Gene ID: k141_65583_7
Type: CAZyme
Location: 12459 - 13955 (+)
Gene ID: k141_65583_8
Type: TF
Location: 14040 - 18584 (-)
Gene ID: k141_65583_9
Type: CAZyme
Location: 18765 - 20504 (-)
Gene ID: k141_65583_10
Type: CAZyme
Location: 20844 - 21788 (-)
Gene ID: k141_65583_11
Type: CAZyme
Location: 21825 - 23024 (-)
Gene ID: k141_65583_12
Type: TC
Location: 23326 - 24729 (+)
Gene ID: k141_65583_13
Type: pfam
Location: 24751 - 25674 (+)
Gene ID: k141_65583_14
Type:
Location: 25652 - 25858 (-)
Gene ID: k141_65583_15
Type: TC
Location: 25942 - 27459 (+)
Gene ID: k141_65583_16
Type:
Location: 27547 - 27678 (+)
Gene ID: k141_65583_17
Type: pfam
Location: 27856 - 31239 (-)
Gene ID: k141_65583_18
Type: TC
Location: 31214 - 32038 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Bacteroides
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
k141_65583_2 vegan > omnivore 1.05042 0.00029
k141_65583_2 vegetarian > omnivore 1.17991 0.00993
k141_65583_3 vegan > omnivore 1.16756 0.00029
k141_65583_3 vegetarian > omnivore 1.74408 0.00993
k141_65583_4 vegan > omnivore 1.14584 0.00029
k141_65583_5 vegetarian > omnivore 1.05719 0.00993

🧭 Explore Read Mapping of CGC

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