Cluster: CGMR062874_CGC47
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 6
- Substrate:
- Genome ID: CGMR062874
- CGC Family ID: CGCFAM_01124
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_125226 | k141_125226_2 | 737 | 2428 | + | 3.A.1.120.6 |
| TC | k141_125226 | k141_125226_3 | 2645 | 5950 | + | 1.B.14.6.3 |
| pfam | k141_125226 | k141_125226_4 | 6117 | 7217 | - | Exo_endo_phos |
| STP | k141_125226 | k141_125226_5 | 7276 | 9981 | - | HATPase_c | HisKA | Response_reg |
| CAZyme | k141_125226 | k141_125226_6 | 10076 | 11290 | - | GT2 |
| pfam | k141_125226 | k141_125226_7 | 11311 | 12798 | - | Polysacc_deac_3 |
| CAZyme | k141_125226 | k141_125226_8 | 12866 | 13720 | - | GT2 |
| CAZyme | k141_125226 | k141_125226_9 | 13732 | 14889 | - | GT4 |
| CAZyme | k141_125226 | k141_125226_10 | 14901 | 16055 | - | GT4 |
| NULL(UNKNOWN) | k141_125226 | k141_125226_11 | 16092 | 17219 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | k141_125226 | k141_125226_12 | 17286 | 18197 | - | GT101 |
| TC | k141_125226 | k141_125226_13 | 18200 | 19654 | - | 2.A.66.2.23 |
| CAZyme | k141_125226 | k141_125226_14 | 19647 | 20762 | - | GT94 |
Gene ID: k141_125226_2
Type: TC
Location: 737 - 2428 (+)
Type: TC
Location: 737 - 2428 (+)
Gene ID: k141_125226_3
Type: TC
Location: 2645 - 5950 (+)
Type: TC
Location: 2645 - 5950 (+)
Gene ID: k141_125226_4
Type: pfam
Location: 6117 - 7217 (-)
Type: pfam
Location: 6117 - 7217 (-)
Gene ID: k141_125226_5
Type: STP
Location: 7276 - 9981 (-)
Type: STP
Location: 7276 - 9981 (-)
Gene ID: k141_125226_6
Type: CAZyme
Location: 10076 - 11290 (-)
Type: CAZyme
Location: 10076 - 11290 (-)
Gene ID: k141_125226_7
Type: pfam
Location: 11311 - 12798 (-)
Type: pfam
Location: 11311 - 12798 (-)
Gene ID: k141_125226_8
Type: CAZyme
Location: 12866 - 13720 (-)
Type: CAZyme
Location: 12866 - 13720 (-)
Gene ID: k141_125226_9
Type: CAZyme
Location: 13732 - 14889 (-)
Type: CAZyme
Location: 13732 - 14889 (-)
Gene ID: k141_125226_10
Type: CAZyme
Location: 14901 - 16055 (-)
Type: CAZyme
Location: 14901 - 16055 (-)
Gene ID: k141_125226_11
Type:
Location: 16092 - 17219 (-)
Type:
Location: 16092 - 17219 (-)
Gene ID: k141_125226_12
Type: CAZyme
Location: 17286 - 18197 (-)
Type: CAZyme
Location: 17286 - 18197 (-)
Gene ID: k141_125226_13
Type: TC
Location: 18200 - 19654 (-)
Type: TC
Location: 18200 - 19654 (-)
Gene ID: k141_125226_14
Type: CAZyme
Location: 19647 - 20762 (-)
Type: CAZyme
Location: 19647 - 20762 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_125226_7 | vegan > omnivore | 1.38548 | 0.00029 |
| k141_125226_8 | vegan > omnivore | 1.56337 | 0.00029 |
| k141_125226_11 | vegan > omnivore | 2.08270 | 0.00029 |
| k141_125226_12 | vegan > omnivore | 2.20105 | 0.00029 |