Cluster: CGMR062874_CGC4
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 4
- Substrate: xylan/beta-glucan
- Genome ID: CGMR062874
- CGC Family ID: CGCFAM_00116
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_131816 | k141_131816_1 | 253 | 1836 | - | CBM91 | GH43_10 |
| CAZyme | k141_131816 | k141_131816_2 | 1914 | 4733 | - | CBM35 | GH98 |
| CAZyme | k141_131816 | k141_131816_3 | 4757 | 6400 | - | GH30_8 |
| NULL(UNKNOWN) | k141_131816 | k141_131816_4 | 6418 | 6813 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | k141_131816 | k141_131816_5 | 6904 | 9159 | - | GH10 |
| pfam | k141_131816 | k141_131816_6 | 9184 | 10230 | - | BT_3987-like_N | DUF5627 |
| pfam | k141_131816 | k141_131816_7 | 10263 | 12032 | - | SusD_RagB | SusD-like_3 |
| TC | k141_131816 | k141_131816_8 | 12059 | 14878 | - | 1.B.14.6.1 |
| pfam | k141_131816 | k141_131816_9 | 14911 | 16773 | - | SusD_RagB | SusD-like_3 |
| TC | k141_131816 | k141_131816_10 | 16783 | 19935 | - | 1.B.14.6.1 |
Gene ID: k141_131816_1
Type: CAZyme
Location: 253 - 1836 (-)
Type: CAZyme
Location: 253 - 1836 (-)
Gene ID: k141_131816_2
Type: CAZyme
Location: 1914 - 4733 (-)
Type: CAZyme
Location: 1914 - 4733 (-)
Gene ID: k141_131816_3
Type: CAZyme
Location: 4757 - 6400 (-)
Type: CAZyme
Location: 4757 - 6400 (-)
Gene ID: k141_131816_4
Type:
Location: 6418 - 6813 (-)
Type:
Location: 6418 - 6813 (-)
Gene ID: k141_131816_5
Type: CAZyme
Location: 6904 - 9159 (-)
Type: CAZyme
Location: 6904 - 9159 (-)
Gene ID: k141_131816_6
Type: pfam
Location: 9184 - 10230 (-)
Type: pfam
Location: 9184 - 10230 (-)
Gene ID: k141_131816_7
Type: pfam
Location: 10263 - 12032 (-)
Type: pfam
Location: 10263 - 12032 (-)
Gene ID: k141_131816_8
Type: TC
Location: 12059 - 14878 (-)
Type: TC
Location: 12059 - 14878 (-)
Gene ID: k141_131816_9
Type: pfam
Location: 14911 - 16773 (-)
Type: pfam
Location: 14911 - 16773 (-)
Gene ID: k141_131816_10
Type: TC
Location: 16783 - 19935 (-)
Type: TC
Location: 16783 - 19935 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_131816_2 | vegan > omnivore | 2.04674 | 0.00029 |
| k141_131816_3 | vegan > omnivore | 2.21692 | 0.00029 |
| k141_131816_3 | vegetarian > omnivore | 1.27137 | 0.00993 |
| k141_131816_5 | vegan > omnivore | 1.38769 | 0.00029 |
| k141_131816_6 | vegan > omnivore | 1.02940 | 0.00029 |